Hi, Jason,
On Mi, 2016-10-05 at 03:40 +, jason.r...@csiro.au wrote:
>
> [...]
> This is arising from the vignette and is due to the package msmsEDA
> not being present. If I keep peeling the dependencies back, I get to
> mzR, which has trouble loading the Windows dynamic link library. See:
>
Hi there,
I notice the Harman package which I maintain is not building on Windows. See:
http://bioconductor.org/checkResults/3.4/bioc-LATEST/Harman/?
This is arising from the vignette and is due to the package msmsEDA not being
present. If I keep peeling the dependencies back, I get to mzR, w
- Original Message -
> From: "Martin Morgan"
> To: "McDavid, Andrew" , "bioc-devel"
>
> Sent: Tuesday, October 4, 2016 2:09:27 PM
> Subject: Re: [Bioc-devel] Why can't NAMESPACE be a strict subset of
> DESCRIPTION Imports?
> On 10/04/2016 05:07 PM, McDavid, Andrew wrote:
>> BiocCheck
On 10/04/2016 05:07 PM, McDavid, Andrew wrote:
BiocCheck throws a warning when a package is listed as Imports: in DESCRIPTION
but not used in the NAMESPACE. This may happen when a developer uses the fully
qualified names of objects within a package. I am unclear as to the rationale
for this
BiocCheck throws a warning when a package is listed as Imports: in DESCRIPTION
but not used in the NAMESPACE. This may happen when a developer uses the fully
qualified names of objects within a package. I am unclear as to the rationale
for this warning.
Per Hadley:
It's common for packages t
Hi Lori,
Thank you for the information and for the quick response!
Thanks!
Lauren
On Tue, Oct 4, 2016 at 1:01 PM, Shepherd, Lori <
lori.sheph...@roswellpark.org> wrote:
> Lauren,
>
>
> Thank you for your interest in submitting to Bioconductor.
>
> Currently we only support the use of github fo
Lauren,
Thank you for your interest in submitting to Bioconductor.
Currently we only support the use of github for package submission. After the
package has been accepted through the review process, it does not have to
remain in github.
Lori Shepherd
Bioconductor Core Team
Roswell Park Ca
Hello Bioconductor Core Team,
We use bitbucket to host all our software repositories. Is there a way to
submit a bitbucket URL for a new bioconductor package or does it need to be
from github? If it has to be in github, do we need to maintain the original
repository that created the initial biocon
- Original Message -
> From: "Hervé Pagès"
> To: "Dan Tenenbaum"
> Cc: "Philipp Angerer" , "bioc-devel"
>
> Sent: Tuesday, October 4, 2016 10:16:34 AM
> Subject: Re: [Bioc-devel] tokay1 (windows) build server cannot use the
> nbconvertR vignette engine
> On 10/04/2016 09:56 AM, Dan
On 10/04/2016 09:56 AM, Dan Tenenbaum wrote:
- Original Message -
From: "Hervé Pagès"
To: "Philipp Angerer" , "bioc-devel"
Sent: Tuesday, October 4, 2016 9:23:29 AM
Subject: Re: [Bioc-devel] tokay1 (windows) build server cannot use the
nbconvertR vignette engine
Hi Philipp,
O
- Original Message -
> From: "Hervé Pagès"
> To: "Philipp Angerer" , "bioc-devel"
>
> Sent: Tuesday, October 4, 2016 9:23:29 AM
> Subject: Re: [Bioc-devel] tokay1 (windows) build server cannot use the
> nbconvertR vignette engine
> Hi Philipp,
>
> On 10/04/2016 12:13 AM, Angerer, Ph
Dear all,
linux builders have both IPython 3+ and Jupyter installed, see
https://github.com/Bioconductor/BBS-provision-cookbook/blob/master/recipes/default.rb#L256-L264
For consistency, maybe it would make sense to have them both on Windows too.
Cheers,
Andrzej
On Tue, Oct 4, 2016 at 6:23 PM, H
Hi Philipp,
On 10/04/2016 12:13 AM, Angerer, Philipp via Bioc-devel wrote:
Hi,
Looking at my package’s build report, the devel version isn’t built anymore on
windows:
http://bioconductor.org/checkResults/devel/bioc-LATEST/destiny/tokay1-buildsrc.html
The release version is built just fine wi
Perhaps interesting for some:
http://www.turing-gateway.cam.ac.uk/tgmw39.shtml
___
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
Hi all,
I have a subtle question related to how R CMD SHLIB handles variables in
make child processes. In more detail: I am the maintainer of the 'msa'
package which has been in Bioconductor since April 2015. This package
integrates three open-source libraries for multiple sequence alignment.
Hi,
Looking at my package’s build report, the devel version isn’t built anymore on
windows:
http://bioconductor.org/checkResults/devel/bioc-LATEST/destiny/tokay1-buildsrc.html
The release version is built just fine with moscato2:
http://bioconductor.org/checkResults/release/bioc-LATEST/dest
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