Re: [Bioc-devel] Fwd: BiocInstaller::useDevel() Error: 'devel' version requires a more recent R

I just checked by sending a commit to my package. I am also still seeing installation of R version 3.3.1: $ curl -Lo /tmp/R-3.3.1.xz https://s3.amazonaws.com/rstudio-travis/R-3.3.1.xz In fact looking at the Travis build log more closely, all packages still seem to be coming from Bioconductor

Re: [Bioc-devel] Fwd: BiocInstaller::useDevel() Error: 'devel' version requires a more recent R

I am not sure if the _intention_ is that bioc-devel installs r-devel. But note that this is a change in the last 48h. Monday, the right thing was to use r-stable. Some switch has to be flipped and it may not have happened yet. What would be nice is clear documentation as to whether bioc-devel

Re: [Bioc-devel] Fwd: BiocInstaller::useDevel() Error: 'devel' version requires a more recent R

Hi again, I applied your YAML config in my latest commit But in my (ongoing) Travis build , I can already see that it has installed the wrong R version (3.1.1, not devel), see line 370

Re: [Bioc-devel] Fwd: BiocInstaller::useDevel() Error: 'devel' version requires a more recent R

Thanks Lukas, I remember trying "r: bioc-devel" and having issues with it a while ago, but maybe I had an overall incorrect combination of YAML instructions, so I'll try again with your config and see if that works better. Things moving a lot during the release process, YAML files may just

Re: [Bioc-devel] Fwd: BiocInstaller::useDevel() Error: 'devel' version requires a more recent R

Hi Kevin, I have been using the following setup in my .travis.yml file. Travis CI should automatically use the correct version of R for the Bioconductor version specified in the "r: bioc-devel" line (you can replace this with "r: bioc-release" to use the release version). There is some more

Re: [Bioc-devel] Fwd: BiocInstaller::useDevel() Error: 'devel' version requires a more recent R

Actually, nevermind, I think I solved the issue of R-devel with the following YAML instructions: language: r r: devel before_install: - Rscript -e 'source(file = "http://bioconductor.org/biocLite.R ");tryCatch(useDevel(devel = TRUE), error = function(err){message(err)})' - if [[

Re: [Bioc-devel] Fwd: BiocInstaller::useDevel() Error: 'devel' version requires a more recent R

By the way, the reason why I am asking is that BiocCheck raised the following warning, after I upgraded my system to R-3.4 and Bioc-devel: WARNING: Update R version dependency from 3.3 to 3.4 Now that I updated the R version dependency, everything is fine on my updated machine, but the Travis

Re: [Bioc-devel] Fwd: BiocInstaller::useDevel() Error: 'devel' version requires a more recent R

Hi all, First of all, thanks for the question and answers, it helped me a lot on my local machine. While we're on the topic, does anyone know when R-devel (R-3.4) will be available on Travis CI ? Because it is running R-3.3.1, and therefore produces the same error message when I instruct Travis

Re: [Bioc-devel] Fwd: BiocInstaller::useDevel() Error: 'devel' version requires a more recent R

On 10/20/2016 12:00 AM, Michael Lawrence wrote: -- Forwarded message -- From: Rodriguez Martinez, Andrea Date: Wed, Oct 19, 2016 at 3:33 PM Subject: Re: [Bioc-devel] BiocInstaller::useDevel() Error: 'devel' version requires a more

[Bioc-devel] Doubt with deprecating a function

Hi everyone, I am the developer of MEAL package. In the previous release, I deprecated a function (multiCorrMethExprs). In this release, I marked this function as defuncted. I followed the instructions of Bioconductor's web page: I included the defunct function in the body of my function, I