Re: [Bioc-devel] Advice on build error related to webshot, and possibly related to rmarkdown?

2016-12-07 Thread Hervé Pagès
Not clear to me what's going on, I'm not a knitr/rmarkdown expert. What I see is that knitr suggests webshot probably because it needs it in some situations. That must be a rare situation though because webshot is not installed on our build machines, which means that none of the 1298 software pack

Re: [Bioc-devel] Advice on build error related to webshot, and possibly related to rmarkdown?

2016-12-07 Thread Stian Lågstad
Thank you both. Could you also advice me on the error I'm receiving on oaxaca? "there is no package called 'webshot'" New build report: http://bioconductor.org/spb_reports/chimeraviz_ buildreport_20161207152203.html On Wed, Dec 7, 2016 at 7:42 PM, Hervé Pagès wrote: > Hi Stian, > > The build mac

Re: [Bioc-devel] Advice on build error related to webshot, and possibly related to rmarkdown?

2016-12-07 Thread Hervé Pagès
Hi Stian, The build machines used by the SPB are the same as the machines used for the daily builds and they already have the latest BiocStyle installed (BiocStyle 2.3.23). You can see this by going on the daily build report for devel and clicking on any of the link in the "Installed pkgs" column

Re: [Bioc-devel] Advice on build error related to webshot, and possibly related to rmarkdown?

2016-12-07 Thread Leonardo Collado Torres
Hi Stian, Install BiocStyle 2.3.20 or newer and that error will go away. See https://github.com/Bioconductor/BiocStyle/issues/20 for details. Best, Leo On Wed, Dec 7, 2016 at 7:44 AM, Stian Lågstad wrote: > Hi, > > Could someone please advice me on the errors I'm getting building my > package?

[Bioc-devel] Advice on build error related to webshot, and possibly related to rmarkdown?

2016-12-07 Thread Stian Lågstad
Hi, Could someone please advice me on the errors I'm getting building my package? I'm unable to reproduce them locally. Link to build report: http://bioconductor.org/spb_reports/chimeraviz_buildreport_20161130173413.html Link to bioconductor submission issue: https://github.com/Bioconductor/Contr