Re: [Bioc-devel] phloseq error: invalid class “sample_data” object: superclass "vectorORfactor" not defined in the environment of the object's class

2017-02-21 Thread Martin Morgan
On 02/21/2017 03:24 PM, Levi Waldron wrote: On Tue, Feb 21, 2017 at 2:02 PM, Hervé Pagès > wrote: Hi Levi, Were you able to sort this out? I think we should emphasize the importance of re-installing packages *from source* (i.e.

Re: [Bioc-devel] phloseq error: invalid class “sample_data” object: superclass "vectorORfactor" not defined in the environment of the object's class

2017-02-21 Thread Levi Waldron
On Tue, Feb 21, 2017 at 2:02 PM, Hervé Pagès wrote: > Hi Levi, > > Were you able to sort this out? I think we should emphasize the > importance of re-installing packages *from source* (i.e. with > biocLite(..., type="source")). This is because some of the package > binaries

Re: [Bioc-devel] phloseq error: invalid class “sample_data” object: superclass "vectorORfactor" not defined in the environment of the object's class

2017-02-21 Thread Hervé Pagès
Hi Levi, Were you able to sort this out? I think we should emphasize the importance of re-installing packages *from source* (i.e. with biocLite(..., type="source")). This is because some of the package binaries we distribute seem to be affected by this problem too. We're planning to fix these