Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 beta

FWIW here are all the packages that are victim of this installed.packages bug in today's build report: alpine fCI GenomicFeatures QuasR We only see this error on tokay2 (Windows). H. On 04/11/2017 04:21 PM, Gordon K Smyth wrote: I restarted my PC this morning and the problem

Re: [Bioc-devel] Error in tokay2

but not GenomicFeatures, which is another victim of this install.packages bug: https://bioconductor.org/checkResults/3.5/bioc-LATEST/GenomicFeatures/tokay2-checksrc.html AFAICS we've been seeing this problem on tokay2 (Windows) almost every day for the last few weeks. I guess it started after

Re: [Bioc-devel] package 'msa' not building on veracruz2, but on toluca2 and other Mac OS systems

Hi David, Yes, definitely related to this thread. FWIW the msa compilation problem on veracruz2 seems to be caused by some recent changes to the clang compiler. Following the CRAN folks lead, we use clang 4 on veracruz2, which is a more recent version than the one shipped with Xcode. It's

Re: [Bioc-devel] build on different version

hi, thanks for the update, let me know if i can do something about the problem with the mavericks build. btw, the last changes i made to VariantFiltering to pass the build without errors and warnings have broken another package (RareVariantVis) that i wasn't aware until today that it was

Re: [Bioc-devel] package 'msa' not building on veracruz2, but on toluca2 and other Mac OS systems

Hello, My Bioconductor Package ‘LymphoSeq’ received the following build error on veracruz2: ERROR: dependency ‘msa’ is not available for package ‘LymphoSeq’ Indeed, ‘msa’ is one of my package dependencies.