Re: [Bioc-devel] xps build problem on veracruz2

2017-04-22 Thread Hervé Pagès
On 04/22/2017 03:06 PM, cstrato wrote: Dear Herve, At the moment I found also the following link: https://urldefense.proofpoint.com/v2/url?u=https-3A__www.jlab.org_theory_tag_cosyn_manual.pdf&d=DwIDaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=7tn_6rjQ1Z2nt6iYVeE8un

Re: [Bioc-devel] xps build problem on veracruz2

2017-04-22 Thread Hervé Pagès
On 04/22/2017 02:57 PM, cstrato wrote: Dear Herve, Thank you for your efforts to get xps running. I will make the changes in Makefile.arch, too, and update README and rename it to install. I am also surprised that the libs get installed under /lib/root, and I will check if there is a reason fo

Re: [Bioc-devel] Vignette update after change in git mirror repo

2017-04-22 Thread Maia Smith
Thank you, Sean and James! I think this fixed the problem, Sean - will know when the build is finished today. MUCH appreciated. On Fri, Apr 21, 2017 at 4:13 PM, Sean Davis wrote: > Sorry I lead you astray, earlier, Maia. > > In general, you do not need to install the package in the vignette. The

Re: [Bioc-devel] xps build problem on veracruz2

2017-04-22 Thread cstrato
Dear Herve, At the moment I found also the following link: https://www.jlab.org/theory/tag/cosyn/manual.pdf which states: Error Wrong ELF class. If you get errors mentioning ELF-class then you are probably linking 64 to 32 bit code which does not compute. Make sure you are linking to the 64 bi

Re: [Bioc-devel] xps build problem on veracruz2

2017-04-22 Thread cstrato
Dear Herve, Thank you for your efforts to get xps running. I will make the changes in Makefile.arch, too, and update README and rename it to install. I am also surprised that the libs get installed under /lib/root, and I will check if there is a reason for this. As far as I remember, long ti

Re: [Bioc-devel] xps build problem on veracruz2

2017-04-22 Thread Hervé Pagès
Hi Christian, Thanks for the update. Glad it works for you. One small thing is that, if CMAKE_INSTALL_PREFIX is specified when configuring ROOT, the ROOT libs get installed under /lib/root, not under /lib. I was surprised by this, but that's what I got when I installed ROOT on veracruz2. I confi

Re: [Bioc-devel] xps build problem on veracruz2

2017-04-22 Thread cstrato
Dear Herve, I am glad to inform you that I have just uploaded version xps_1.35.3 to BioC-dev branch. I have followed your suggestion to use -rpath and have eliminated the environment variables DYLD_LIBRARY_PATH and LD_LIBRARY_PATH. I have tested the new version on both Yosemite and on Sierra

Re: [Bioc-devel] test coverage of a shiny app

2017-04-22 Thread Marcel Ramos
Hi Sam, This is a pertinent issue to shiny app development and there are continuing efforts to create unit tests for shiny applications. At the moment, there is a package dedicated to providing tests for shiny applications but it has not been published. See: https://github.com/rstudio/shinytest T