Re: [Bioc-devel] using BiocLite() on Ubuntu Xenial with its default R 3.2.3 release

On 07/20/2017 08:36 AM, Jack Howarth wrote: I am trying to use the BiocLite() feature of Bioconductor to install the R modules required by MetaboAnalyst 3.0 under Ubuntu Xenial 16.04LTS with its system R 3.2.3 release. I have added the repo for Micheal Rutter's cran2deb4ubuntu to provide the miss

Re: [Bioc-devel] strand<- method for 'GPos' doesn't work

hi Hervé, i had not imagine this could require so much code refactoring, so thanks a lot for the quick and extensive fix. i'll have a close look and let you know if i encounter any problem. thanks again!!! robert. On 07/20/2017 11:23 AM, Hervé Pagès wrote: Hi Robert, This should work in G

[Bioc-devel] using BiocLite() on Ubuntu Xenial with its default R 3.2.3 release

I am trying to use the BiocLite() feature of Bioconductor to install the R modules required by MetaboAnalyst 3.0 under Ubuntu Xenial 16.04LTS with its system R 3.2.3 release. I have added the repo for Micheal Rutter's cran2deb4ubuntu to provide the missing cran R modules but have avoided installing

Re: [Bioc-devel] strand<- method for 'GPos' doesn't work

Hi Robert, This should work in GenomicRanges 1.29.10. Note that working on this revealed some minor shortcomings of the GPos internal representation so I decided to change it. The new one relies on IPos, a new class in IRanges 2.11.10. IPos is analog to GPos but for "integer positions" instead o