Re: [Bioc-devel] Updates to BiocStyle formatting

2017-08-18 Thread Andrzej Oleś
Dear Bioconductor Developers, As announced previously, the style functions have been updated to the new formatting in BiocStyle version 2.5.19. Package maintainers who already use the new style (`latex2`, `pdf_document2` or `html_document2`) are now encouraged to update their vignettes by

Re: [Bioc-devel] Updating package development version

2017-08-18 Thread Hervé Pagès
Hi Pedro, The build system didn't pick up your changes because of an issue with the script that we use to propagate the latest package changes to the build machines. Sorry for that. The issue should be fixed now so hopefully you'll see CEMiTool 0.99.9 on tomorrow's build report (the report is

Re: [Bioc-devel] Generate valid SSH keys for the bioc-git server!

2017-08-18 Thread Bemis, Kylie
Thanks! It works now. Kylie ~~~ Kylie Ariel Bemis Future Faculty Fellow College of Computer and Information Science Northeastern University kuwisdelu.github.io On Aug 18, 2017, at 1:36 PM, Turaga, Nitesh

Re: [Bioc-devel] Generate valid SSH keys for the bioc-git server!

2017-08-18 Thread Turaga, Nitesh
Hi Kylie, Your key shows as accepted. Nitesh > On Aug 18, 2017, at 1:28 PM, Bemis, Kylie wrote: > > Dear Bioc-Devel > > I am still having trouble fetching from the repository. I’ve tried submitting > both my Github username and copy-pasting public SSH key to the

Re: [Bioc-devel] Generate valid SSH keys for the bioc-git server!

2017-08-18 Thread Bemis, Kylie
Dear Bioc-Devel I am still having trouble fetching from the repository. I’ve tried submitting both my Github username and copy-pasting public SSH key to the Google Form. My public key in ~/.ssh/id_rsa.pub and on Github look similar to the example, so it appears valid to me, but I still get an

Re: [Bioc-devel] Git transition is happening August 16th.

2017-08-18 Thread Martin Morgan
On 08/18/2017 12:21 PM, Tiago Chedraoui Silva wrote: I had the same problem, which is described below: https://askubuntu.com/questions/144235/locale-variables-have-no-effect-in-remote-shell-perl-warning-setting-locale-f I did the "Stop forwarding locale from the client" solution and it worked.

Re: [Bioc-devel] Git transition is happening August 16th.

2017-08-18 Thread Tiago Chedraoui Silva
I had the same problem, which is described below: https://askubuntu.com/questions/144235/locale-variables-have-no-effect-in-remote-shell-perl-warning-setting-locale-f I did the "Stop forwarding locale from the client" solution and it worked. Best regards, Tiago Chedraoui Silva On Fri, Aug 18,

Re: [Bioc-devel] Git transition is happening August 16th.

2017-08-18 Thread Martin Morgan
On 08/16/2017 08:45 PM, Charles Plessy wrote: Le Wed, Aug 16, 2017 at 08:30:22PM +, Turaga, Nitesh a écrit : The Bioconductor git server is now alive!! All future commits to Software and Data experiment packages should be made to the git server. Please see the documentation on how to use