Likely you or one of your dependent packages makes use of Matrix without
using import() in the NAMESPACE file.
Email formatting makes it hard to tell exactly what is going on; make
sure you are sending email in plain text, and that the build / check
steps are done at the command line rather th
On 08/21/2017 05:30 PM, Stephanie M. Gogarten wrote:
I was actually thinking of SeqVarTools, since I have local commits that
I'm not ready to push yet. GENESIS and GWASdata could be put on the "do
not regenerate" list also - they have no unknown users, and I'd rather
not go through all the step
I was actually thinking of SeqVarTools, since I have local commits that
I'm not ready to push yet. GENESIS and GWASdata could be put on the "do
not regenerate" list also - they have no unknown users, and I'd rather
not go through all the steps again if I don't have to.
thanks,
Stephanie
On 8/
Hi Martin,
Can you check DEGreport? I have made commits already but is not in your list.
I am off the office, so cannot check anything until tomorrow.
Thanks
sent not from my computer
> On Aug 21, 2017, at 16:23, Martin Morgan
> wrote:
>
>> On 08/21/2017 03:17 PM, Stephanie M. Gogarten wrot
On 08/21/2017 03:17 PM, Stephanie M. Gogarten wrote:
If we followed the steps here:
https://www.bioconductor.org/developers/how-to/git/maintain-github-bioc/
How much, if any, of this will need to be redone after the repositories
are regenerated? In particular, if I don't have an unknown user, w
If we followed the steps here:
https://www.bioconductor.org/developers/how-to/git/maintain-github-bioc/
How much, if any, of this will need to be redone after the repositories
are regenerated? In particular, if I don't have an unknown user, will
the regenerated commits be equal to the previous
I've restarted the service and the search is fixed (for the time being).
The website search is powered by solr. We continue to have problems with this
service (or it's child processes) dying unexpectedly. An initial look at the
logs is not very informative and I haven't had a chance to dig into
Thanks, Nitesh!
Best regards,
Julie
On 8/21/17, 12:38 PM, "Turaga, Nitesh" wrote:
Hi,
Your key is not in the system yet. It currently runs on a 24 hour cycle
till we perfect the system.
In the meantime if you would like read-only access you can use HTTPS.
``
Hi,
Your key is not in the system yet. It currently runs on a 24 hour cycle till we
perfect the system.
In the meantime if you would like read-only access you can use HTTPS.
```
git clone https://git.bioconductor.org/packages/CRISPRseek
```
Best,
Nitesh
> On Aug 21, 2017, at 11:25 AM, Zhu,
Hi git transitioners --
We'd like to regenerate git repositories from svn. This is because some
svn user ids were mapped to 'unknown' git users, so that contributors
would not be credited accurately. This will invalidate any local clones
made from git.bioconductor.org.
Our plan is to regene
Thanks for the report. I'll look into it.
Valerie
On 08/21/2017 08:07 AM, Kevin RUE wrote:
Hi,
I got the same issue yesterday if that can help track down the origin; it
wasn't just today.
I thought it was a transient glitch and didn't report it immediately. I
hadn't checked today yet.
Best
Kev
Hi Matthew,
> On Aug 20, 2017, at 10:26 PM, Matthew Myint
> wrote:
>
> Hi, thanks for the transition! Its nice to work from git without the need to
> use svn.
>
> Anyway, I have a couple of questions regarding the usage of git
>
> 1) When syncing my own GitHub and the Bioconductor git repos
Dear Nitesh,
I submitted my ssh keys. However, I cannot download my packages from github.
Could you please help? Thanks!
#
juliezhumac2017:Trunk ZHUJ$ git clone
g...@git.bioconductor.org:packages/CRISPRseek
Cloning into 'CRISPRseek'...
Permission denied (publickey).
fatal: Could not read fr
Hi,
I got the same issue yesterday if that can help track down the origin; it
wasn't just today.
I thought it was a transient glitch and didn't report it immediately. I
hadn't checked today yet.
Best
Kevin
On Mon, Aug 21, 2017 at 3:58 PM, Laurent Gatto wrote:
>
> Dear Bioconductor admins,
>
>
Dear Bioconductor admins,
When using the search box on www.bioconductor.org, I systematically get
the following error
A timeout or invalid search term resulted in an error.
Best wishes,
Laurent
--
Laurent Gatto | @lgatt0
http://cpu.sysbiol.cam.ac.uk/
http://lgatto.github.io/
_
The GitHub ID and the associated key was added to the bios-git server on August
18th. You’d need to use that specific public key to access the server.
Best,
Nitesh
> On Aug 21, 2017, at 9:35 AM, Turaga, Nitesh
> wrote:
>
> Hi Dario,
>
> Did you upload a new key? I’m attaching the thread
Hi Dario,
Did you upload a new key? I’m attaching the thread you need to follow up on.
This was sent out specifically in response to the key you submitted.
Best,
Nitesh
——
——
——
Thanks! It works now.
Kylie
~~~
Kylie Ariel Bemis
Future Facu
Ok, I'll do that.
Thanks
*Bernat Gel Moreno*
Bioinformatician
Hereditary Cancer Program
Program of Predictive and Personalized Medicine of Cancer (PMPPC)
Germans Trias i Pujol Research Institute (IGTP)
Campus Can Ruti
Carretera de Can Ruti, Camí de les Escoles s/n
08916 Badalona, Barcelona, Sp
On 08/21/2017 09:22 AM, Bernat Gel wrote:
Hi,
It seems like a couple of months ago I fixed a bug in release version of
karyoploteR and pushed a DESCRIPTION with the wrong version number,
going from 1.0.1 to 1.1.6 (the one in devel at the moment). So now both
devel and release are in 1.1.*
Hi,
It seems like a couple of months ago I fixed a bug in release version of
karyoploteR and pushed a DESCRIPTION with the wrong version number,
going from 1.0.1 to 1.1.6 (the one in devel at the moment). So now both
devel and release are in 1.1.*
Should I do something to get release back t
Good day,
I filled out the form on Thursday, but can't fetch the repository.
$ git fetch upstream
Permission denied (publickey).
fatal: Could not read from remote repository.
--
Dario Strbenac
University of Sydney
Camperdown NSW 2050
Australia
21 matches
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