Re: [Bioc-devel] assay dimnames in SingleCellExperiment / SummarizedExperiment

Hi guys, On 09/16/2017 03:49 AM, Kevin RUE wrote: Hi Aaron, Yes - sorry, I meant the names of dimnames. Dimnames are indeed checked, but my code was meant to demonstrate that names of dimnames aren't. Obviously, it's not the end of the world, but just something I noticed while I was

Re: [Bioc-devel] Question about inclusion in upcoming bioconductor

Hi Jason, Note that https://bioconductor.org/developers/how-to/git/ has a collection of documents that cover all the aspects of maintaining a Bioconductor package via git/GitHub. In particular see "New package workflow" for what to do after package acceptance and "Push to GitHub and

[Bioc-devel] Change push privileges on MotifDb

Hi all, I've been working with Paul Shannon to update the MotifDb package, of which he is currently maintainer. Going forward, we have agreed that I should take over the responsibility of pushing package changes to the upstream branch. I assume this means we would need to switch the package

Re: [Bioc-devel] Errors updating DaMiRseq package

http://bioconductor.org/developers/how-to/git/sync-existing-repositories/ This should help you with the issue you are having. Please follow those steps. Best, Nitesh > On Sep 22, 2017, at 11:02 AM, Mattia Chiesa wrote: > > Dear all, > I am the mantainer of the

[Bioc-devel] Errors updating DaMiRseq package

Dear all, I am the mantainer of the DaMiRseq package. I have some problems with GIT: I filled the form for ssh key some weeks ago and I guess everthinks is ok. $ git remote -v origin https://github.com/BioinfoMonzino/DaMiRseq.git (fetch) origin https://github.com/BioinfoMonzino/DaMiRseq.git

Re: [Bioc-devel] Bad keys

Hi Michael, I have seen that you have been resubmitting your keys again for some reason. First, I must say, without changing your keys, please do not resubmit as this does nothing. Bioconductor already has a key on file for you, (note, you SVN ID is m.zimmermann, spelled exactly like that)

Re: [Bioc-devel] Vignette figures are wrong size

On 09/22/2017 03:27 AM, Christopher John wrote: Dear Bioconductor I checked my vignette using the knit option to biocstyle on my PC and the figure sizes were all fine after some tweaking. However, in the online vignette they have come out crazy small sizes. Previously I was resizing them so

[Bioc-devel] Vignette figures are wrong size

Dear Bioconductor I checked my vignette using the knit option to biocstyle on my PC and the figure sizes were all fine after some tweaking. However, in the online vignette they have come out crazy small sizes. Previously I was resizing them so they matched each other using the width command as