[Bioc-devel] write access to git repos for two packages maintained

2017-11-09 Thread Alicia Schep
I have two new packages in latest release of Bioconductor, and am having issues pushing to the git repo for one. One was accepted when BioC was still using SVN, and the other after transition to git. I first entered my ssh key info into the form with the github username, and got access to the rep

[Bioc-devel] website

2017-11-09 Thread Shepherd, Lori
Hello everyone, We are making some updates that could affect the website. If the website is down please be patient it is intermittent and should be remedied quickly. We will try and get these updates done as soon as possible. Thank you Lori Shepherd Bioconductor Core Team Roswell Park C

Re: [Bioc-devel] annotation data not updated?

2017-11-09 Thread Van Twisk, Daniel
It appears that your org.Hs.eg.db and GO.db packages are still v3.4.2. Please run the command BiocInstaller::biocLite() to update your packages to the new version (v3.5.0). From: Bioc-devel on behalf of Yu, Guangchuang Sent: Thursday, November 2, 2017 8:40:31

Re: [Bioc-devel] annotation data not updated?

2017-11-09 Thread Van Twisk, Daniel
Thanks for looking into this. New versions of the OrgDbs and Db0s (v3.5.0) are now available that have up-to-date resources. Here is the output of the new org.Hs.eg.db: > x <- org.Hs.eg.db > x OrgDb object: | DBSCHEMAVERSION: 2.1 | Db type: OrgDb | Supporting package: AnnotationDbi | DBSCHEMA