Re: [Bioc-devel] Bioconductor build reports as a tidy data frame

On Fri, Nov 17, 2017 at 4:13 PM, Hervé Pagès wrote: > This is very nice! Thanks Sean. Might use it in pre-release times to > track down package failures and chase people ;-) > I am always happy to help come up with new ways to remind folks of their package failures. >

Re: [Bioc-devel] Bioconductor build reports as a tidy data frame

This is very nice! Thanks Sean. Might use it in pre-release times to track down package failures and chase people ;-) One minor thing: do you think you could have the install, buildsrc, checksrc, buildbin stages in that order in the hist plot? On my Christmas list: How hard would it be to have

[Bioc-devel] Bioconductor build reports as a tidy data frame

Just in case some developers would like to review the Bioconductor build report as computable data in R: http://bit.ly/2zKL3M3 Sean -- Sean Davis, MD, PhD Center for Cancer Research National Cancer Institute National Institutes of Health Bethesda, MD 20892 https://seandavi.github.io/

Re: [Bioc-devel] annotation data not updated?

I believe this now should be corrected. I had updated standard org but not the additional orgdb. Please let me know if there seems to be any other issues. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets

Re: [Bioc-devel] OrgDb in AnnotationHub

The OrgDbs in AnnotationHub are now back available. Thank you for your patience. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel

Re: [Bioc-devel] Git access

We changed this policy as of yesterday to reduce confusion for people who are submitting keys. Have you tried to access your package (ROTS) ? We have a key on file for you. If you have submitted your key a while ago, then my suggestion would be try to first access your package. Best,

Re: [Bioc-devel] Do we have an unpacked archive for BioC, so that we can URL link to individual files ?

On 11/17/2017 04:08 AM, Neumann, Steffen wrote: Hi, I would like to have a URL to individual files we have in BioC packages. This is useful e.g. if I need test data from, say, the msdata package, in another context. In the SVN days, I was able to point directly into the SVN repo with

[Bioc-devel] Do we have an unpacked archive for BioC, so that we can URL link to individual files ?

Hi, I would like to have a URL to individual files we have in BioC packages. This is useful  e.g. if I need test data from, say, the msdata package, in another context. In the SVN days, I was able to point directly into the SVN repo with readonly:readonly access. We also had the (now