Re: [Bioc-devel] EXTERNAL: Re: unknown build error novel bioc. package

Hi Marcel, Thanks for looking into this. I fixed it and pushed. Lets see if the package is building without errors now! Cheers, Maarten On Wed, Dec 13, 2017 at 9:53 PM, Marcel Ramos wrote: > Hi Maarten, > > Sorry about the confusion. The link you provided pointed

Re: [Bioc-devel] EXTERNAL: Re: unknown build error novel bioc. package

Hi Maarten, Sorry about the confusion. The link you provided pointed to errors in *omicRexposome*. It appears that the errors you're getting for *omicsPrint* have to do with the `getGEO` call on line #261 in the vignette. It can be fixed if you introduce a `fileext` argument to `tempfile()`.

Re: [Bioc-devel] unknown build error novel bioc. package

Hi Marcel, Thanks for your help, do you mean I should add "bgredata" to our DESCR file? omicsPrint should not depend on it? This sessionInfo when omicsPrint is loaded: > library(omicsPrint) Loading required package: MASS in method for ‘coerce’ with signature

[Bioc-devel] unknown build error novel bioc. package

Hi Maarten, It appears that your vignette is pointing to a package that doesn't exist in the build system. Please reference `package = "brgedata"` instead. Regards, Marcel *Note. Apologies if you've received this email twice. On 12/13/2017 02:09 PM, Maarten van Iterson wrote: > Dear all, >

Re: [Bioc-devel] EXTERNAL: unknown build error novel bioc. package

Hi Maarten, It appears that your vignette is pointing to a package that doesn't exist in the build system. Please reference `package = "brgedata"` instead. Regards, Marcel On 12/13/2017 02:09 PM, Maarten van Iterson wrote: > Dear all, > > Our new package, omicsPrint, has been accepted and

[Bioc-devel] unknown build error novel bioc. package

Dear all, Our new package, omicsPrint, has been accepted and added to the bioconductor build system but is not passing through on any system. Locally we are able to build install and execute the vignette. We have tried several things without success. The current error we got for version 0.99.29

Re: [Bioc-devel] Question about Access to Bioconductor through Git

Hi George, If you’ve had an SVN id before, then you would have to submit that. I’ve checked your submission and you have to submit just your SVN ID, not the password. Please try and check for this. Otherwise, there is no way for us to associate your package with your Github ID. Best,

Re: [Bioc-devel] Single Package Builder Updates and Testing

Testing is complete. The single package builder should be functioning normally Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel

Re: [Bioc-devel] splitting simpleSingleCell into self-contained vignettes

While we wait for the changes to come online: would you be open to PRs to workflow.md? I was thinking of making a nested list for the Introduction/part 1/part 2/part 3, which is a bit nicer to read. -A On 12/12/17 22:11, Andrzej Oleś wrote: > Thanks for you feedback Aaron! > > On Tue, Dec 12,