[Bioc-devel] Updating bioconductor after computer transfer - problem

Hi I have recently copy and pasted my github directory from my old PC to a new PC. I can update the github still fine, but bioconductor I get an error: christopher@RA-MAP:~/M3C$ git remote -v originhttps://github.com/crj32/M3C (fetch) originhttps://github.com/crj32/M3C (push) upstream

Re: [Bioc-devel] SummarizedExperiment: duplication of metadata, when modifying colData

Hi Felix, Nice catch. This can actually be reproduced with just: > example(SummarizedExperiment) > metadata(se0) <- list(aa="aa") > se0[1 , ] <- se0[1 , ] > metadata(se0) $aa [1] "aa" $aa [1] "aa" The culprit is this line: ans_metadata <- c(metadata(x), metadata(value)) in

[Bioc-devel] GSE62944, empty EH164 and EH165

Hi, I'm trying to obtain the most recent version of GSE62944 from ExperimentHub via > library(ExperimentHub) > hub <- ExperimentHub() > gse <- AnnotationHub::query(hub, "GSE62944") > gse ExperimentHub with 3 records # snapshotDate(): 2017-10-30 # $dataprovider: GEO # $species: Homo sapiens