Re: [Bioc-devel] error while trying to run BiocCheck

2018-03-03 Thread Martin Morgan
On 03/03/2018 06:45 AM, Claris Baby via Bioc-devel wrote: Dear all,I am trying to build a package for RNA-seq analysis combining different existing packages in bioconductor and am facing problem while trying to run BiocCheck("/home/package_name", `no-check-vignettes`=TRUE) The error generate

Re: [Bioc-devel] Updated Deprecated Package List for Bioc 3.7

2018-03-03 Thread Ludwig Geistlinger
Hi Lori, Yes I would take over maintenance. Anything particular that I need to take care of? Otherwise I would just follow: https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ to accordingly set this up. Thanks, Ludwig -- Dr. Ludwig Geistlinger CUNY School of Public H

Re: [Bioc-devel] Updated Deprecated Package List for Bioc 3.7

2018-03-03 Thread Shepherd, Lori
Hi Ludwig, Were you still interested in taking over maintainership of ToPaSeq? We have switched permission and you should have access now. If you are no longer interested please let us know. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics &

[Bioc-devel] Single Package Builder temporarily down

2018-03-03 Thread Shepherd, Lori
There have been some updates to the builders and will require some additional updates to the single package builder. While this is occurring the single package builder for new package submissions will temporarily be down. We will notify when the updates are complete and the single package buil

[Bioc-devel] error while trying to run BiocCheck

2018-03-03 Thread Claris Baby via Bioc-devel
Dear all,I am trying to build a package for RNA-seq analysis combining different existing packages in bioconductor and am facing problem while trying to run  BiocCheck("/home/package_name", `no-check-vignettes`=TRUE) The error generated is as follows: This is BiocCheck version 1.14.0. BiocCheck