Hi,
I submitted R package MAGeCKFlute last year, which should be released
recently. However, I checked the release list from "
https://bioconductor.org/checkResults/release/bioc-LATEST/";, and I didn't
find my package "MAGeCKFlute". Can you help to check that? And tell me why?
Look forward for yo
No problem. I'm glad you figured it out.
Valerie
On 04/02/2018 03:16 PM, Lorena Pantano wrote:
Yep, silly mistake, it seems I was in the stable version. Dummy me. I�ll kick
myself for make you waste your time.
Thanks for your time.
On Apr 2, 2018, at 5:30 PM, Obenchain, Valerie
mailto:valeri
Yep, silly mistake, it seems I was in the stable version. Dummy me. I’ll kick
myself for make you waste your time.
Thanks for your time.
> On Apr 2, 2018, at 5:30 PM, Obenchain, Valerie
> wrote:
>
> Hi Lorena,
>
> You'll have to supply more information for us to help you. The build report
>
Hi Lorena,
You'll have to supply more information for us to help you. The build report
shows version 1.7.3:
https://www.bioconductor.org/checkResults/devel/bioc-LATEST/
What version are you expecting? Have you pushed all local changes to
git.bioconductor.org? What does `git log` say? How abo
Hi,
I am trying to get the last version of my package(isomiRs) to be build by the
testing system, but it seems it doesn’t get
updated(http://bioconductor.org/checkResults/release/bioc-LATEST/isomiRs/).
It is still seeing the version from last year even when I updated the package
last week (ho
for two host-types I am seeing an error that I do not know how to address
Loading required package: ontologyIndex
sh: line 1: 76907 Abort trap: 6 'convert'
'BiocOncoTK_files/figure-html/lkgbm-1.png' -trim
'BiocOncoTK_files/figure-html/lkgbm-1.png' > /dev/null
sh: line 1: 76914 Abort trap
I get the following on MacOSX, after library(rJava); library(GenomicRanges)
-- take rJava out of the mix and
there is no error. I ran into this originally as an interaction between
rJava and Gviz, and have reported to
Florian. That seemed to be MacOSX-specific.
> gr1 <- GRanges(seqnames=Rle(c("c
Hello Maintainers,
The following packages have been identified for changing the functions
‘Matrix::cBind’ and ‘Matrix::rBind’ to the ‘base::cbind’ and ‘base::rbind’. The
functions ‘Matrix::cBind’ and ‘Matrix::rBind’ have been deprecated by the
author of the Matrix package.
(https://cran.r-pro
Hi Zheng,
Thanks for the report. I will look into this and will let you know.
H.
On 04/01/2018 02:38 AM, Zheng Wei wrote:
Dear all,
I find this error if calling library(rJava) before using
BiocGenerics::unique
The code is pasted below.
Thanks,
Zheng
> library(rJava)
> library(GenomicRa
The Bioconductor Team has identified the following list of deprecated packages:
Maintainer requested deprecation:
Software Package:
ontoCAT
spliceR (functionalities moved to IsoformSwitchAnalyzeR)
mvGST
Experiment Data Package:
RnaSeqTutorial
cheung2010
MEALData (replaced with brge
Hi,
Thank you for all the work in this transition Andrzej, Lori, Valerie,
Nitesh and Hervé!
I have a few questions about the new system.
1) I already had a github repo (that I manually kept in sync with the
subversion one) for the recountWorkflow. Should I just follow the
instructions at
http:/
Dear all,
probably this is for Hervé Pagès:
I tried the following code, which should according to ?AAString not work, since
ÜÖÄ are not part of any AA code.
> AAString("ÜÄÖ")
3-letter "AAString" instance
seq: ÜÄÖ
> sessionInfo()
R version 3.4.4 (2018-03-15)
Platform: x86_64-w64-mingw32/x64 (6
As stated in the release schedule The Deadline for all packages passing R CMD
build and R CMD check without errors or warnings in devel is Wednesday April
25th. This includes software, data experiment and workflow packages. Some
warnings will be accepted, with clarification on the bioc-devel mai
Today is the final day to submit new packages to the Bioconductor contributions
tracker to have a shot at being included in the upcoming 3.7 release at the end
of the month.
https://github.com/Bioconductor/Contributions
Please note: submission today does not guarantee it will be included - the
For now the page at
https://www.bioconductor.org/help/workflows/
will remain and be updated accordingly however there is discussion about having
this page be removed or redirected.
In the next few days I hope to have the new landing pages up and running and
will make an announcement when they
Dear all,
I am a maintainer of package 'esATAC'.
I find this error if calling library(rJava) before using BiocGenerics::unique.
This error makes esATAC under bioc_3_7 check error because esATAC has to import
rJava.
The error reproduce-able code and session information is pasted below.
T
Hi,
Please read through this documentation.
http://bioconductor.org/developers/package-submission/
Nitesh
> On Apr 2, 2018, at 2:00 AM, Pijush Das wrote:
>
> Dear Sir,
>
>
>
> I have developed an R package. I want to submit this package in
> Bioconductor.
> Please help me to submit the R
Dear all,
I am a maintainer of package 'esATAC'
I find this error if calling library(rJava) before using BiocGenerics::unique
The code is pasted below.
Thanks,
Zheng
> library(rJava)
> library(GenomicRanges)
Loading required package: stats4
Loading required package: BiocGenerics
Loading
Dear Sir,
I have developed an R package. I want to submit this package in
Bioconductor.
Please help me to submit the R package.
regards
Pijush Das
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