Re: [Bioc-devel] ggplot2 update coming on June 25 and how it affects ggbio + other packages

2018-06-06 Thread Michael Lawrence
Hi Leonardo, I'm aware that the new ggplot2 is breaking ggbio. I haven't yet convinced myself to actually fix it, even though I know there's no way to avoid it. ggbio represents a big piece of technical debt, and I'm not sure how to pay it off. Michael On Wed, Jun 6, 2018 at 1:03 PM, Leonardo

[Bioc-devel] ggplot2 update coming on June 25 and how it affects ggbio + other packages

2018-06-06 Thread Leonardo Collado Torres
Hi, Two of my Bioconductor packages (regionReport and derfinderPlot) use ggplot2 via ggbio. Since other packages import/suggest ggbio http://bioconductor.org/packages/release/bioc/html/ggbio.html I'm curious if you've taken a look at the email from Hadley Wickham and the upcoming update to

Re: [Bioc-devel] Submit package under a Github organization

2018-06-06 Thread Leonardo Collado Torres
Hi, I don't think that anything changes. At least, I don't remember that being the case (I have a few packages hosted in organization accounts). If it does break, share the github url to bioc-devel to get more specific feedback. Best, Leo On Wed, Jun 6, 2018 at 11:52 AM, Diogo P. P. Branco

[Bioc-devel] Submit package under a Github organization

2018-06-06 Thread Diogo P. P. Branco
Dear all, Are there any specifics for submitting a software package which I created under a Github organization I am part of? Perhaps there is something different regarding the SSH key? I am familiar with the package submission process when the repository is under my account. Thank you for