Re: [Bioc-devel] EXTERNAL: permanent link to package

2018-07-31 Thread Turaga, Nitesh
I think, http://bioconductor.org/packages/CAMTHC should be fine. This link is permanent, but the 10.18129/B9.bioc.CAMTHC link isn’t a bad idea as well. This DOI link just resolves to the original link ( http://bioconductor.org/packages/CAMTHC) anyway. Take a look a this too,

[Bioc-devel] permanent link to package

2018-07-31 Thread Lulu Chen
Dear Bioc Team, My package is still in the develop version. But I need to add a permanent URL link in my paper. Which option is better: http://bioconductor.org/packages/CAMTHC or 10.18129/B9.bioc.CAMTHC Thanks, Lulu [[alternative HTML

Re: [Bioc-devel] EXTERNAL: introducing BiocManager in devel package pages?

2018-07-31 Thread Shepherd, Lori
We assume most users are using release not devel. So this page is appropriate for the majority users using release 3.7. This page is scheduled to be updated when the next release happens and BiocManager goes live in the Bioc3.8 release. It has been pointed out and we have it as a task to

Re: [Bioc-devel] EXTERNAL: introducing BiocManager in devel package pages?

2018-07-31 Thread Shepherd, Lori
Yes DropletUtils has a release and a devel page; as most of the Bioconductor package do. The devel pages have been updated for the BiocManager while the release still are BiocInstaller. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics &

Re: [Bioc-devel] EXTERNAL: introducing BiocManager in devel package pages?

2018-07-31 Thread Tim Triche, Jr.
Now I am wondering about my sanity... it seems like perhaps DropletUtils has a release package page too? In any event, looks like things are all set. thanks! --t On Tue, Jul 31, 2018 at 9:21 AM Shepherd, Lori < lori.sheph...@roswellpark.org> wrote: > Where exactly did you see this? It will

Re: [Bioc-devel] EXTERNAL: introducing BiocManager in devel package pages?

2018-07-31 Thread Shepherd, Lori
Where exactly did you see this? It will be up to the package maintainers to update their package documentation (vignettes and such). We have updated the devel package landing pages to include the new BiocManager instructions already:

[Bioc-devel] introducing BiocManager in devel package pages?

2018-07-31 Thread Tim Triche, Jr.
So I was looking at DropletUtils and stumbled on this: To install this package, start R and enter: ## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R;) biocLite("DropletUtils") It seems like maybe devel might be a sensible place to start migrating