Re: [Bioc-devel] Warning in 'CHECK' report for Windows machine after release version bump

2018-11-01 Thread Obenchain, Valerie
Yep, my mistake. I was confusing this with another error I was looking into. Valerie On 11/1/18 11:02 AM, Pages, Herve wrote: > Just to clarify we see these warnings on Mac only: > > https://bioconductor.org/checkResults/3.9/bioc-LATEST/NormalyzerDE/merida2-checksrc.html > > https://biocondu

Re: [Bioc-devel] Warning in 'CHECK' report for Windows machine after release version bump

2018-11-01 Thread Pages, Herve
Just to clarify we see these warnings on Mac only: https://bioconductor.org/checkResults/3.9/bioc-LATEST/NormalyzerDE/merida2-checksrc.html https://bioconductor.org/checkResults/3.9/bioc-LATEST/M3C/merida2-checksrc.html They seem to indicate problems with CRAN packages xts, ggplot2, and ape. Fo

Re: [Bioc-devel] Warning in 'CHECK' report for Windows machine after release version bump

2018-11-01 Thread Obenchain, Valerie
Hi, I noticed this before the release - many packages are affected with a similar error. Something this pervasive is likely due to a change (bug?) in base R and not something you need to fix. It may also be fixed in a later version of R version than what's on the build machines. Now that the r

Re: [Bioc-devel] Warning in 'CHECK' report for Windows machine after release version bump

2018-11-01 Thread Christopher John
Hi I also have a warning after the upgrade, just for the development version (I have not changed). I am not sure why this happened as I can't find the ape in the namespace and previously had no warning before upgrade. Thanks. * checking whether package ‘M3C’ can be installed ... WARNING Found t

[Bioc-devel] Warning in 'CHECK' report for Windows machine after release version bump

2018-11-01 Thread Jakob Willforss
Hi! Getting closer to release, exciting! Today I saw that the build for my package NormalyzerDE gave a warning after the release version bumps, but only on the Windows build machine. No code has been changed from previously succeeding builds. It seems to be unable to find certain functions in t