Re: [Bioc-devel] Manually editing man/.Rd files to pass BiocCheck

2018-11-18 Thread L Rutter
Thanks for the confirmation. I will post if I do find ways to resolve this issue without manually editing the .Rd file. On Mon, Nov 19, 2018 at 12:31 AM Michael Lawrence wrote: > > On Sun, Nov 18, 2018 at 9:16 PM L Rutter wrote: > > > > Hello all: > > > > I am preparing to submit a package to Bio

Re: [Bioc-devel] Manually editing man/.Rd files to pass BiocCheck

2018-11-18 Thread Michael Lawrence
On Sun, Nov 18, 2018 at 9:16 PM L Rutter wrote: > > Hello all: > > I am preparing to submit a package to Bioconductor and have one note > from R CMD BiocCheck that I have been unable to resolve. The note I > receive is: > > NOTE: Consider multiples of 4 spaces for line indents, 40 lines(1%) are no

[Bioc-devel] Manually editing man/.Rd files to pass BiocCheck

2018-11-18 Thread L Rutter
Hello all: I am preparing to submit a package to Bioconductor and have one note from R CMD BiocCheck that I have been unable to resolve. The note I receive is: NOTE: Consider multiples of 4 spaces for line indents, 40 lines(1%) are not. First 6 lines: man/plotClusters.Rd:8 threshVal =

Re: [Bioc-devel] use bioc docker images to reproduce linux build error?

2018-11-18 Thread Paul Shannon
Hi Val, Thanks for the pointer. I now import RMariaDB in the NAMESPACE and the DESCRIPTION files. That seemed to solve the problem. When I updated from RMySQL, I failed to do that. I changed .BBSoptions to simply “win” as you suggest, but just as a temporary measure. I don’t remember wh