Re: [Bioc-devel] support the stable version of R

2019-01-15 Thread Ludwig Geistlinger
> Having said that, I'll note that specifying R as a dependency, and a version > of R as a criterion for your package, is really a mis-nomer for a > Bioconductor package -- of course it uses R, and the version of R in use > determines the Bioconductor version(s) that can be used! So a rational

Re: [Bioc-devel] What is good convention for package-local BiocParallel param?

2019-01-15 Thread Aaron Lun
> From the above example, if I had the BPPARAM argument, it’d also clearly add > a lot of code noise: > > data %>% > apply_methods(method_list1, BPPARAM = MulticoreParam(stop.on.error=FALSE)) %>% > apply_methods(method_list2, BPPARAM = MulticoreParam(stop.on.error=FALSE)) %>% >

Re: [Bioc-devel] support the stable version of R

2019-01-15 Thread Martin Morgan
Probably my rant yesterday was a bit confused. BiocCheck tries to encourage better practice. If you've chosen to specify version (maybe there are reasons for this, e.g., because in the past you have distributed your package through non-Bioconductor channels), then specify it correctly. On the