Re: [Bioc-devel] set.seed and BiocParallel

2019-03-12 Thread Aaron Lun
I think Kylie is saying that she wants to use the same seed for each feature across different runs, but the seed can be different across features - which would make more sense. Multi-worker reproducibility is an issue that we discussed before (the link goes into the middle of the thread): ht

Re: [Bioc-devel] set.seed and BiocParallel

2019-03-12 Thread Kasper Daniel Hansen
But why do you want the same seed for the different features? That is not the right way to use stochastic methods. Best, Kasper On Tue, Mar 12, 2019 at 5:20 PM Bemis, Kylie wrote: > Hi all, > > I remember similar questions coming up before, but couldn’t track any down > that directly pertain to

[Bioc-devel] set.seed and BiocParallel

2019-03-12 Thread Bemis, Kylie
Hi all, I remember similar questions coming up before, but couldn’t track any down that directly pertain to my situation. Suppose I want to use bplapply() in a function to fit models to many features, and I am applying over features. The models are stochastic, and I want the results to be repr

Re: [Bioc-devel] Package missing in BiocCredentials app

2019-03-12 Thread Turaga, Nitesh
Hi Markus, How about now, I just gave you permissions. You should be able to see it in the app, and get access to it. Best, Nitesh > On Mar 11, 2019, at 6:38 PM, Markus Riester wrote: > > Hi, > > an old data package of mine (curatedBladderData) is not showing up in my > BiocCredentials ac