Hi,
I'm really struggling with how to use an S4 class defined in another package,
where I would like to define a method for it in my package. By way of simple
example, I'd like to use a DNAStringSet to define an expected GC distribution
based on a given fragment size. I had defined the method
Breaker breaker.
1) A package to define a base (virtual) "Interactions" class. This would
basically have a constant "Vector" store with a "Hits" object specifying
the pairwise interactions between elements in the constant store. One
could also distinguish between "SelfInteractions" (constant
I'm having a build error on only the OSX servers.
* creating vignettes ... ERROR
--- re-building ‘rgsepd.Rnw’ using knitr
Error: processing vignette 'rgsepd.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'rgsepd.tex' failed.
LaTeX errors:
! Use of \blx@bbl@verbadd@i doesn't match its
Hello Biocondcutor Community!
This is just a friendly reminder that our contributed package deadline for the
upcoming Bioconductor 3.9 release is April 24th.
Also, we plan to have our db0 packages completed by April 8th.
This email message may contain legally privileged and/or confidential
The version of R devel being used could be significant. There have been a
number of changes in R devel that could be the culprit.
Could be completely unrelated but one such example is the random number
generator updates:
https://stat.ethz.ch/pipermail/bioc-devel/2019-March/014776.html
Dear Bioconductor,
Our bumphunter package is failing its unit tests fairly spectacularly:
the pval algorithm seems to be returning a data frame full of zeroes.
Unfortunately, I have not been able to reproduce this behavior. I have
instantiated an EC2 instance with the devel AMI, updated all
I added a response to your issue at
https://github.com/Bioconductor/Contributions/issues/1002#issuecomment-478991986
encouraging you (again) to avoid installing software on the user system; there
are basic problems with this approach, and the correct solution is to list
kallisto as a
Thank you. We are still looking into the issue and hope to have it resolved
soon.
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From:
I am still getting a Windows build error in my seqCAT package. I thought this
was a problem with VariantAnnotation after an update, which also seemed to be
the case after communication with Valerie Obenchain. My package was apparently
not the only package affected by this, and I was told the
Hello,
My package (called BgeeCall) is under review and passed R CMD Build and
R CMD Check for Linux and windows.
I still have an error on Mac. I tried to reproduce it using different
versions of R (3.5 and 3.6) and different OS
versions (Sierra and El Capitan). I tried on 5 different
10 matches
Mail list logo
