Dear developers,
Here is another change in recent R devel that affects a few Bioconductor
software packages. setClass() used to be tolerant to typos when specifying slot
names in the prototype of the class. E.g. this works in R 3.5:
setClass("A", slots=c(stuff="ANY"),
Dear developers,
As reported on this list in March
(https://stat.ethz.ch/pipermail/bioc-devel/2019-March/014776.html) the sample()
function has changed in recent R-devel. This change breaks the 19 following
Bioconductor software packages:
- cicero
- clipper
- clusterExperiment
- CMA
The app and package were associated with your svn account; I have updated the
app to know about your current email address; you should be able to request a
password reset and add ssh keys.
Martin
On 4/8/19, 6:19 PM, "Bioc-devel on behalf of Hannes Hettling"
wrote:
Dear Bioconductor
Dear Bioconductor team,
I am trying to push bugfixes for the package BiGGR and get
"Permission denied (publickey)"; thus I follow the FAQ and try to upload my
ssh key
via the BiocCredentials site.
There I get the error:
"hannes.hettl...@naturalis.nl is not associated with a maintainer of a
The function needs to be exported from the name space, and documented. Since
you're using roxygen2, the relevant tag is
#' @export
above the definition of the function.
Martin
On 4/8/19, 4:00 PM, "Bioc-devel on behalf of margaret linan"
wrote:
Hi -
Can anyone tell me how to
Hi -
Can anyone tell me how to make my main function PoTRA.corN immediately
available to people who load the PoTRA library?
I tried without importing a object containing the function but that approach
didn’t work. Also during this test there was a file in the github repo that
contained the
Hi Chengyang -- welcome!
1. yes, there can be multiple commits and then a bump of z. Only when z is
incremented does a new version propagate from the build system to the public
repository available to end users. It is probably best practice to bump the
version z on every commit -- there is no
Excellent. Thanks for taking good care of your package :-)
H.
On 4/8/19 10:26, Karl Stamm wrote:
Thank you so much. That fixed the issue. My package is now building correctly
on all services. We switched from biblatex to natbib. I did have to update the
citation commands in the text to go
Hi everyone,
I no longer have the time to keep maintaining the flowQB BioConductor
package, and so I was wondering if there is anyone else who would be
willing to take it on. Alternatively, we would have to deprecate and then
remove the package from the future BioConductor releases.
Best,
Josef
Hi,
I�ve been further going through the �developer resources� as my package just
got accepted. And I have few things to ask/confirm.
1. About the versioning scheme (x, y, z). Can we increment �z� by 1 for
multiple commits? Does the scheme imply that we only change �z� unless the
package has
Dear Lori,
I have just seen that you have installed ROOT on 'celaya2', and now the
status of xps is 'OK'.
Thank you for the installation.
Best regards,
Christian
On 06.04.19 14:12, Shepherd, Lori wrote:
I believe ROOT was installed yesterday. It should clear up on the build system
over
The following package will also be deprecated
NGScopy
spliceSites
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Bioc-devel on behalf of
You can manage your ssh keys through the credentials app
https://git.bioconductor.org/BiocCredentials/login/?next=/BiocCredentials/
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York
Hi
I am Mohammed OE Abdallah, the maintainer of cellbaseR package. I am on a
new laptop, and I need to add/update my ssh keys to The Bioconductor so I
can keep maintaining my package
Best,
Mohammed
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