Hi,
R CMD check on the tokay2 machine fails due to an error in running tests from
testthat in the devel branch of my package universalmotif with no indication as
to why. Here is the output from R CMD check:
* checking tests ...
** running tests for arch 'i386' ...
Running 'spelling.R'
This should be in trunk and the 3.6 release branch.
On Thu, Mar 28, 2019 at 9:57 AM Michael Lawrence wrote:
> Not yet. Too busy breaking other things ;) I'll move it up on my TODO list.
>
> On Thu, Mar 28, 2019 at 9:16 AM Pages, Herve wrote:
>
>> Hi Michael,
>>
>> Did you get a chance to make
gCrisprTools has reached out and will no longer be deprecated
flowQB and flowQBData will be deprecated (note: user reached out to community
and is willing to pass maintainership - if anyone is willing we will
undeprecate)
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Dear Lori Shephard,
Yesterday it came to my attention that gCrisprTools is slated for
deprecation. Apparently, I've missed some related emails. Sorry about that.
I'm not sure why I didn't get them. I have pushed a fix for the bug to
master. Would it be possible to remove gCrisprTools from the
Hello Bioconductor Community!
The newest db0s for the upcoming Bioconductor 3.9 release are up and should
propagate within a day or so.
They are:
anopheles.db0_3.8.0.tar.gz
arabidopsis.db0_3.8.0.tar.gz
bovine.db0_3.8.0.tar.gz
canine.db0_3.8.0.tar.gz
chicken.db0_3.8.0.tar.gz
Hey Herve,
Yes this explains everything. Now I understand the building systems and
availability better.
It was not clear to me before that different versions of the package could
have different availability.
Many thanks for your clear answer,
Jurrian
Hi Jurrian,
Let's keep this conversation on the list.
On 4/9/19 01:43, Jurrian de Kanter wrote:
Hello Herve,
Thank you for your quick reaction!
Good to know that it has been an issue before and that I can ignore it.
Will my package still be included in bioconductor 3.9 though?
I expect that
We are aware of the issue in VariantAnnotation and hopefully will have a fix
soon. We have been seeing this ERROR on tokay2 (windows) but not on the other
two platforms. Is this the case for your package? What is the name/package
issue number of the submitted package?If so, we would
Hello,
I am attempting to submit a new package, and everything builds correctly
against R 3.5 and release bioconductor, but the package build is failing in
devel due to a dependent package. The build error is:
Quitting from lines 52-56 (vignettes.Rmd)
Error: processing vignette 'vignettes.Rmd'
