When it comes to Hi-C, HiCBricks which is a package that I authored already
incorporates some of the intersection capabilities you are asking for. The
functions of interest are Brick_return_region_position and
Brick_fetch_range_index. These functions take genomic coordinates and return
Hi,
in a lot of the bioinformatics analysis I have to carry out, I end up needing
to take an arbitrary number of GRanges objects and flatten them before
generating a matrix of all elements that overlap. This is useful for, say,
comparing replicates in a ChIP-seq experiment, or caracterizing
Dear All,
(Follow up to
https://stat.ethz.ch/pipermail/bioc-devel/2019-May/015151.html)
The newest version of a package we develop, OncoSimulR[1] cannot be built
with Rtools35, the current toolchain[2], because of a known problem where
compilation and linking fail[3].
However, we can build
