Re: [Bioc-devel] Trigger a new build after version bump

2019-12-16 Thread Ahmed Metwally
Hi Jakob, Thanks for your explanation. I was looking for any statement about how long should I wait but couldn't find any. I pushed the updates around 6 hours ago. I'll wait for 24-48h as you suggested and will check back. Best, From: Jakob Theorell Sent: Monda

Re: [Bioc-devel] Trigger a new build after version bump

2019-12-16 Thread Jakob Theorell
Dear Ahmed, I am not in the core team, but I still wonder: how long have you waited since you pushed? During the review process you get an immediate update of the package upon push with a version bump, but with accepted packages it takes 24-48 hours for the changes to trickle through to the buil

[Bioc-devel] Trigger a new build after version bump

2019-12-16 Thread Ahmed Metwally
Dear Bioc devel team, OmicsLonDA package is failing to build on release and devel branches: http://bioconductor.org/checkResults/release/bioc-LATEST/OmicsLonDA/ http://bioconductor.org/checkResults/devel/bioc-LATEST/OmicsLonDA/ I have fixed the issue and pushed the changes to RELEASE_3_10, and d

Re: [Bioc-devel] Bioconductor phenoTest

2019-12-16 Thread Turaga, Nitesh
Hi, Please try again, I've updated your email address it was listed to a irb-barcelona account previously. Best, Nitesh > Dear Lori, > > Thank you for your message. I was about to work on the corrections for the > package. > > The system changed a bit since last time I used it. It seems

[Bioc-devel] Updating Bioconductor Devel 3.11 Builders

2019-12-16 Thread Shepherd, Lori
Hello all, We will be updating R devel on all three platforms (windows, mac os, and linux) today. It should not affect the daily builds but may affect build reports for the single package builder. We hope to minimize downtime and appreciate your patience. Cheers, Lori Shepherd Bioconduct

[Bioc-devel] Bioconductor Developers Forum - Thursday 19th December

2019-12-16 Thread Mike Smith
Dear all, The next Bioconductor Developers' Forum is scheduled for Thursday 19th December at 09:00 PDT/ 12:00 EDT / 18:00 CEST We will be using BlueJeans and the meeting can be joined via: https://bluejeans.com/114067881 (Meeting ID: 114 067 881) If you have any specific topics you'd like to r

Re: [Bioc-devel] Error in Vignette of package

2019-12-16 Thread Renaux Claude
Hi everyone, I've followed the conversation about the errors in rebuilding the vignettes. Thanks a lot for your effort on fixing it. I get the following error on Windows / tokay2 which has not been fixed yet: http://bioconductor.org/checkResults/devel/bioc-LATEST/hierinf/tokay2-buildsrc.html