What is the question?
On 3/26/20 17:36, 유도영 wrote:
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Hi Paul,
I can reproduce this on my laptop. See full output below (it's big!).
Make sure to use a recent version of R devel (I updated mine 3 days
ago). The error seems to occur in MotIV's C/C++ code (in
/home/hpages/R/R-4.0.r78037/library/MotIV/libs/MotIV.so on my machine).
2 unrelated
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Dear Bioc,
I have added the lasted HOCOMOCO motifs to MotifDb but changed no code. The
package 1.29.6 dumps core during in the bioc devel linux build, and fails
perhaps similarly on windows.
http://bioconductor.org/checkResults/devel/bioc-LATEST/MotifDb/malbec2-buildsrc.html
Any
I see changes pushed to the RELEASE_3_10 branch from today. Please see the
top section of this documentation that describes timing and expected changes.
http://bioconductor.org/developers/how-to/troubleshoot-build-report/
It will take 24-48 hours to appear on the build report and landing
Dear Sir or Madam,
Ariane Schad forwarded the e-mail below from Kayla E. Interdonato to me
regarding the MBQN Bioconductor package.
I tried to push the newest version to the release branch using the
following commands:
**
git fetch upstream
git checkout -b RELEASE_3_10 upstream/RELEASE_3_10
usually it is considered very bad practice to simply copy code between packages
-- any bug-fixes or changes in behavior in the up-stream package are not
reflected in the copied code, and 'bit rot' eventually settles in, where the
copied code is no longer functioning correctly.
It is much
Hello there
Is it possible to get Drosophila virilis genome as a BSGenome data package?
e.g. this one
https://metazoa.ensembl.org/Drosophila_virilis/Info/Annotation/
Like to do genome analysis/comparison in BioConductor to another species
which is closely related, but further from Drosophila
Hello,
I am creating a new package that I would like to submit to Bioconductor.
It's essentially a C code, which is called by R (using Rcpp).
One of the C functions within my package, is the C code of the R optimize
function (obtained from a C file of the folder:
I do see changes on our git server from today March 26 th so maybe this has
been resolved?
But generally that means you need to do a
fetch --all # gets all branches from remotes
and do a
git pull upstream master # this gets any changes from the upstream remote
master branch
It is always
Thank you very much for your feedback, Martin and Hervé
Our goal is to make the package available in R as well for users who are more
familiar with this programming language. Python would run behind the scenes, as
kindly suggested by Hervé; basilisk seems a very good option.
Thanks again for
Dear Lori,
Thanks for your help. I went according to your advice but I permanently get
error in the upstream mode, here is the output:
mintty screen dump
Minoo@DESKTOP-PGH7233 MINGW64 ~/Desktop/IMMAN (master)
$ git push origin master
git Enumerating objects: 9, done.
OK couple of "=" were missing.
I think I completed the upload.
Thanks a lot.
Best wishes.
*Stefano *
Stefano Mangiola | Postdoctoral fellow
Papenfuss Laboratory
The Walter Eliza Hall Institute of Medical Research
+61 (0)466452544
Il giorno gio 26 mar 2020 alle ore 18:15 stefano
ha
Thanks a lot for the acceptance, and the time spent on review.
Although my Bioconductor and github accounts share an ssh key I still get
_
rstudio-2 251 % git remote add upstream g...@git.bioconductor.org:
packages/tidybulk.git
rstudio-2 254 % git fetch upstream
Permission
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