Hi Kasper, Martin,
About bsseq's timeout: An important recent change to
DelayedArray/HDF5Array is that, starting with DelayedArray 0.13.8,
nothing in these packages uses parallel evaluation **by default**.
Concretely this means that getAutoBPPARAM() now returns NULL on a fresh
session
Hello Community,
A brief update on the "bioconductor/bioconductor_docker:devel" image which is
produced by the Bioconductor team.
The image will now be updated "weekly" on Friday evening around 6pm EST. This
means that the image will have the latest version of R-devel by the week, and
pushed
Timeouts are often related to parallel evaluation, either competing for
resources or underlying limitations in the robustness of the (parallel) code.
Something close to best practice is to limit or eliminate parallel evaluation
in examples, vignettes, and tests.
Documentation issues are
We currently (and for a while) have had various errors in bsseq that seems
to have come and go. We now have a failure on Windows which is related to
HDF5. I see that HDF5Array also fails on Windows, which makes me believe
the error could be upstream. There is also a warning about hep page links
Yes we will undeprecated the MANOR package.
Are you working on the ERROR's in the devel report? These cannot be ignored.
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York
Hi,
I have updated the Maintainer email address for the MANOR package, so
the package is not "Unresponsive/not-maintained" anymore.
Also, I believe (*) I have fixed the build error that occurs for OS X
on http://bioconductor.org/checkResults/release/bioc-LATEST/MANOR/
(a file encoding issue in
Hi,
I have updated the Maintainer email address for the MANOR package, so
the package is not "Unresponsive/not-maintained" anymore.
Also, I believe (*) I have fixed the build error that occurs for OS X
on http://bioconductor.org/checkResults/release/bioc-LATEST/MANOR/
(a file encoding issue in
