Re: [Bioc-devel] Check error on windows platform for BgeeDB

2020-04-21 Thread Martin Morgan
Instead of downloading each time, consider using BiocFileCache (http://bioconductor.org/packages/devel/bioc/vignettes/BiocFileCache/inst/doc/BiocFileCache.html#local-cache-of-an-internet-resource) to download once (succeeding on a good internet day) and then only need to check for updates (on

[Bioc-devel] Check error on windows platform for BgeeDB

2020-04-21 Thread Julien Wollbrett
Hello, The BgeeDB package has a windows CHECK error in both 3.10 and master branches. https://bioconductor.org/packages/release/bioc/html/BgeeDB.html This error is due to a timeout during an example downloading data from a webservice with the download.file() function. It is the first time

[Bioc-devel] Updates to BiocStyle

2020-04-21 Thread Mike Smith
Dear All, Andrzej Oleś and I have just added responsive layout support to the devel branch of BiocStyle. This should make the HTML vignettes produced by the package work better on small screen sizes like phones & tablets. The changes are summarised on Github at

Re: [Bioc-devel] R-devel for Windows: Rtools3.5 vs Rtools4.0

2020-04-21 Thread Hervé Pagès
On 4/20/20 23:28, Gordon K Smyth wrote: Thanks, that does help. So it seems that R-4.0.0 will use rtools40/mingw64/bin/gcc.exe and I'm guessing that R-4.1.0 uses rtools40/mingw64/bin/x86_64-w64-mingw32-gcc-8.3.0.exe I didn't try R 4.1.0 yet so don't know what it uses but I'm surprised

Re: [Bioc-devel] R-devel for Windows: Rtools3.5 vs Rtools4.0

2020-04-21 Thread Gordon K Smyth
Thanks, that does help. So it seems that R-4.0.0 will use rtools40/mingw64/bin/gcc.exe and I'm guessing that R-4.1.0 uses rtools40/mingw64/bin/x86_64-w64-mingw32-gcc-8.3.0.exe Both files in are in the same directory, so R-4.0.0 and R-4.1.0 should both work with same Windows setup (which