Hi Chris,
That is the question :-)
The last run of the builds got delayed (that's because we updated R to
final 4.0.0 on all build machines on Friday) so we weren't able to
update the report in time today with the results of the builds. Today's
builds have started already and I see that
Hello Bioc-Devel community,
We recently submitted CoreGx to Bioconductor and am happy to announce it was
accepted. However, the package has not yet made it into the 3.11 build and we
are concerned it may not make the release.
Our existing Bioconductor package, PharmacoGx, has significant
Hi Bioc-devel,
Similar to the message I just sent about GenomicFeatures and
TxDb.Hsapiens.UCSC.hg19.knownGene, I found that
TxDb.Hsapiens.UCSC.hg19.knownGene will fail to install on both macOS
and Windows with a fresh R 4.0 and BioC 3.11 installation unless
GenomeInfoDbData is installed manually
Hi Bioc-devel,
I think that there's a potential issue with either GenomicFeatures,
TxDb.Hsapiens.UCSC.hg19.knownGene or an upstream package.
On a fresh R 4.0 Windows installation with BioC 3.11, I get the
following error message when installing
TxDb.Hsapiens.UCSC.hg19.knownGene as shown at
Thanks for the reply.
I don't believe --no-vignettes is set anywhere, unless there's some obscure
config file for builds specifically that I don't know about, and that gets set
in a clean Ubuntu 18.04 install?
Build definitely produces output suggesting it was building the vignette:
==> R
?Thanks Stephanie, that's also a very helpful suggestion! I hadn't thought of
using Docker containers.
From: Stephanie Gogarten
Sent: April 24, 2020 4:34 PM
To: Kieran O'Neill
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Help with setting up a build
Hi,
Thanks! Yes, that'd be it. Looks like I have R 3.6 running locally.
And I suspect you've also identified the cause of the bug. I've tried subbing
is() for class(), and am just waiting for the build to complete.
Kind regards,
Kieran
From: Andris
