[Bioc-devel] Purpose of subsetted GO tables in OrgDb packages

2020-05-11 Thread James W. MacDonald
There is a bug in the way that the OrgDb packages that use the NOSCHEMA schema figure out which tables to use, that was introduced by some changes that Martin made to AnnotationForge last September: commit 02749e3779eb5036211d600915506bab86633ea0 Author: Martin Morgan Date: Fri Sep 27 12:18:48

[Bioc-devel] How to use initializing functions correctly ?

2020-05-11 Thread Charles Plessy
Dear Bioconductor developers, I am using some S4 classes in my package (CAGEr) for type saftety and functional polymorphism; in particular in some case I simply wrap on an existing class, like this: newGPos <- setClass("newGPos", contains = "UnstitchedGPos") (For example to express the fact