[Bioc-devel] Subscription to the list problem

2020-06-09 Thread ELENI ADAM
Hello, I have tried multiple times to subscribe to the bioc-devel list by filling out the web form (https://stat.ethz.ch/mailman/listinfo/bioc-devel) but I have never received a confirmation email (I have checked the Spam folder as well). After checking again, I am still not in the list. I am

Re: [Bioc-devel] GenomicScores: irreproducible build error caused by gwascat

2020-06-09 Thread Hervé Pagès
On 6/9/20 06:57, Martin Morgan wrote: I wrote a small gist

Re: [Bioc-devel] GenomicScores: irreproducible build error caused by gwascat

2020-06-09 Thread Robert Castelo
Martin, i think this is a very good solution, with your script one identifies automatically the broken dependencies and then the installation via git avoid having to clone the corresponding repos. i tried it on another package with broken dependencies right now and it works very well:

Re: [Bioc-devel] GenomicScores: irreproducible build error caused by gwascat

2020-06-09 Thread Martin Morgan
I wrote a small gist https://gist.github.com/mtmorgan/21e18991c6ebdb388e8828bcc0fe72f6 that queries for broken dependencies. Using two packages that have been mentioned recently on this mailing list > tbl <- deps_broken(c("EnrichmentBrowser", "GenomicScores")) > tbl # A tibble: 1 x 5

Re: [Bioc-devel] Submitting SSH key

2020-06-09 Thread Nitesh Turaga
Hi Alemu, You need to do this only if you want to maintain the package. If you don’t want to maintain the package, you don’t have to do this. Best, Nitesh > On Jun 9, 2020, at 4:00 AM, Alemu Takele Assefa > wrote: > > a [[alternative HTML version deleted]]

[Bioc-devel] Submitting SSH key

2020-06-09 Thread Alemu Takele Assefa
Dear, Our package (SPsimSeq) is recently submitted to Bioconductor and accepted after reviews. Following the acceptance message, I'm asked to submit the SSH key. However, I could not submit it because I have never been a maintainer of any Bioc package and I'm not also the maintainer of our