Re: [Bioc-devel] BSgenome changes

Hi Felix, On 8/13/20 21:43, Felix Ernst wrote: Hi Leonard, Hi Herve, I followed your conversation, since I have noticed the same problem. Thanks, Herve, for the explanation of the recent changes on hg19. The GRCh37.P13 report states in its last line: MT assembled-molecule MT

Re: [Bioc-devel] Bioconductor Package Submission - Removing git pack objects

Hi, Please make sure the bare repository is updated with the “removed” artifacts of the .pack files. From what I understand, the .pack files should also be removed by the BFG cleaner. Try and follow this https://stackoverflow.com/questions/11050265/remove-large-pack-file-created-by-git

Re: [Bioc-devel] Bioconductor Package Submission - Removing git pack objects

Hi Joseph, When you run 'R CMD build' you should get a release tarball, which shouldn't contain this .git folder. If you perform the 'R CMD check' on the tarball, you shouldn't get this warning. If you still get the warning, or have other files that generate this warning, then you could try to

[Bioc-devel] Bioconductor Package Submission - Removing git pack objects

To whom it may concern: I am Joseph, writing on behalf of the developers of proActiv, a package used to infer promoter activity from RNA-seq data. We are in the process of preparing the package for Biconductor submission. So far, the package has cleared R