Re: [Bioc-devel] BSgenome changes

2020-08-18 Thread Leonard Goldstein via Bioc-devel
Thanks for the explanation Hervé. Best wishes Leonard On Tue, Aug 18, 2020 at 10:06 AM Hervé Pagès wrote: > On 8/18/20 01:40, Kasper Daniel Hansen wrote: > > In light of this, could we get a version of GRCh37 with only a single > > mitochondrial genome? > > You mean a

Re: [Bioc-devel] BSgenome changes

2020-08-18 Thread Hervé Pagès
On 8/18/20 01:40, Kasper Daniel Hansen wrote: In light of this, could we get a version of GRCh37 with only a single mitochondrial genome? You mean a BSgenome.Hsapiens.NCBI.GRCh37.p13 package? So it would contain the same sequences as BSgenome.Hsapiens.UCSC.hg19 but without the hg19:chrM

Re: [Bioc-devel] BSgenome changes

2020-08-18 Thread Kasper Daniel Hansen
In light of this, could we get a version of GRCh37 with only a single mitochondrial genome? On Fri, Aug 14, 2020 at 6:17 PM Hervé Pagès wrote: > Hi Felix, > > On 8/13/20 21:43, Felix Ernst wrote: > > Hi Leonard, Hi Herve, > > > > I followed your conversation, since I have noticed the same