Re: [Bioc-devel] Missing knitcitations package on devel for PharmacoGx

2020-11-26 Thread Mike Smith
Hi Christopher, It looks like the knitcitations package is no longer on CRAN. Heading to https://cran.r-project.org/web/packages/knitcitations/index.html results in: Package ‘knitcitations’ was removed from the CRAN repository. Formerly available versions can be obtained from the archive.

[Bioc-devel] Solved Bug commiting problem

2020-11-26 Thread Selcen Arı
Hi everyone, I am developer of ceRNAnetsim package ( https://git.bioconductor.org/packages/ceRNAnetsim). We recently saw that it gave errors in build report ( http://bioconductor.org/checkResults/release/bioc-LATEST/ceRNAnetsim/ ), and we fixed the errors in the package, in this direction. After

Re: [Bioc-devel] Missing knitcitations package on devel for PharmacoGx

2020-11-26 Thread Vincent Carey
This problem has been recognized: https://github.com/cboettig/knitcitations/issues/107 In a few days it will likely clear. On Wed, Nov 25, 2020 at 10:26 PM Eeles, Christopher < christopher.ee...@uhnresearch.ca> wrote: > Hello Bioc community, > > I am the maintainer for PharmacoGx and have notice

Re: [Bioc-devel] Solved Bug commiting problem

2020-11-26 Thread Martin Morgan
Yes, the 'master' branch in git refers to the 'devel' branch of Bioconductor. You should not aim to keep the RELEASE_3_12 branch the same as 'devel'. The RELEASE_3_12 branch is meant to be a snapshot of the 'devel' branch at a particular point in time, so that users of the RELEASE_3_12 branch ge

Re: [Bioc-devel] Query on updating version for bioconda-bambu

2020-11-26 Thread Martin Morgan
bioconda is not maintained by Bioconductor, you should ask through bioconda support channels https://bioconda.github.io/ maybe as an issue on their github repository? Martin On 11/25/20, 8:36 PM, "Bioc-devel on behalf of CHEN Ying" wrote: Hello BioC community, I have recently u