[Bioc-devel] Dependency not available for R4.1 on macOS

2021-01-18 Thread Nils Eling
Hi all, I just noticed that a dependency (svglite) for my package (cytomapper) is not available for R v4.1 on macOS (https://bioconductor.org/checkResults/devel/bioc-LATEST/cytomapper/machv2-install.html ).

Re: [Bioc-devel] Dependency not available for R4.1 on macOS

2021-01-18 Thread Martin Morgan
The build system tries to behave like a typical *user* system, so it installs macOS binaries. But for whatever reason, macOS binaries for the 'devel' version of R seem only to be produced at the last minute leading up to a release. So if the package you depend on requires compilation, then it is

Re: [Bioc-devel] Unable to install bioconductor package in bioconductor docker

2021-01-18 Thread David Jimenez-Morales
Martin, your suspicion was right: it was just insufficient memory available for docker in my system. Thank you very much! David On Sun, Jan 17, 2021 at 1:58 PM Martin Morgan wrote: > I'd guess that your *docker* system is running out of resources, e.g., > memory. I'm not sure how docker determi