[Bioc-devel] git permissions

2021-03-01 Thread Michael Lawrence via Bioc-devel
Just got this when trying to push a change to IRanges: Pushing to g...@git.bioconductor.org:packages/IRanges.git FATAL: W any packages/IRanges m.lawrence DENIED by fallthru (or you mis-spelled the reponame) fatal: Could not read from remote repository. Have git permissions changed? Thanks,

Re: [Bioc-devel] Error on BiocCheckGitClone and Windows build

2021-03-01 Thread Kern, Lori
Please feel free to also comment directly on your issue for your reviewer to assist. The packages not being available on windows is likely on our end and you can ignore for now. System files should not be git tracked. They should be remove using git remove and then committed up. git rm git

[Bioc-devel] Moving minfi classes definition to a lighter package

2021-03-01 Thread Carlos Ruiz
Dear Bioc developers, I have been developing different packages to analyze DNA methylation. In all of them, I have used minfi's class GenomicRatioSet to manage DNA methylation data, in order to take profit of the features of RangedSummarizedExperiment. Although I am very happy with the potential

[Bioc-devel] Error on BiocCheckGitClone and Windows build

2021-03-01 Thread Oluwafemi OLUSOJI
Dear All, I recently submitted a package to Bioconductor and got this error message as part of the reply email. I am not sure what to do about it. The two files are git tracked, but they are also named in .Rbuildignore so I felt they should have been avoided. This is my first experience with