Thanks very much, Hervé, I indeed never noticed the wrong number of
elements in my objects.
Best regards,
Oleksii
On Tue, 6 Apr 2021 at 02:10, Hervé Pagès wrote:
> This is fixed in S4Vectors 0.29.13:
>
> https://github.com/Bioconductor/S4Vectors/commit/6d79932910af9618465d5f932df5864d0a270e11
>
This is fixed in S4Vectors 0.29.13:
https://github.com/Bioconductor/S4Vectors/commit/6d79932910af9618465d5f932df5864d0a270e11
This new version of S4Vectors should propagate to the build machines and
become available via BiocManager::install() in the next 48h or so.
Cheers,
H.
On 4/5/21 3:40
Hi Oleksii,
It looks like we have a long-standing bug in the rbind() method for
DataFrame objects that is somehow surfacing now. Here is a simple example:
library(IRanges)
DF1 <- DataFrame(A=I(list(11:12, 21:23)))
DF2 <- DataFrame(A=IntegerList(31:34, 41:45, 51:56))
DF3 <- rbind(DF1, D
Dear Bioc team,
my package has started to fail during the build check (
http://bioconductor.org/checkResults/devel/bioc-LATEST/ramr/). I tried to
figure out why and it appears that I somehow make GRanges object
non-subsettable. Could anyone from "GenomicRanges" developers look at my
issue and advis
Hi Tim,
This package should be fixed now. I've synced your github repo with the one on
git.bioconductor.org.
Please check to make sure everything is as expected including the size.
Best,
Nitesh
On 4/1/21, 6:22 AM, "Bioc-devel on behalf of Triche, Tim"
wrote:
Hi all,
We
We are in process of making some major updates to the caching in BiocFileCache,
AnnotationHub, and ExperimentHub. Namely, the default caching location will
change from using rappdirs::user_cache_dir to using tools::R_user_dir
eventually relieving the dependency on rappdirs. To avoid confli
DifferentialDNA3DStructure has been added to the devel list of biocViews terms
and will be carried through in future releases. It will be available once
biocViews version 1.59.3 propagates on the build system
Cheers,
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Cen
