[Bioc-devel] knitr ERROR on Biocondcutor builders

2021-06-17 Thread Kern, Lori
Hello developers, Recent changes to knitr are producing an ERROR on the build reports for many packages (software, experiment data, workflows). This is a legitimate ERROR and as a maintainer you should address the issue in any offending package as soon as possible. As an example, I fixed th

Re: [Bioc-devel] Issue with Bug fix push in devel branch

2021-06-17 Thread Kern, Lori
Thank you for reporting. This was reported earlier this morning as well. We are working on fixing the bug in the hub code to avoid the errors. We will try to get a patch out as soon as possible. You may ignore the error's on those two platforms for now as there is nothing additional on your

[Bioc-devel] Issue with Bug fix push in devel branch

2021-06-17 Thread Murphy, Alan E
Hi all, I am just after pushing a bug fix to the current release branch (RELEASE_3_13) and the current devel branch for Bioconductor 3.14. A build was attempted for Bioc 3.14 for which the report is here: https://bioconductor.org/checkResults/3.14/bioc-LATEST/EWCE/riesling1-buildsrc.html. The

Re: [Bioc-devel] Build error "failure: length > 1 in coercion to logical" not reproducible

2021-06-17 Thread bodenhofer
Thanks a lot for your swift and helpful reply, Henrik! Yes, I could reproduce the error on my local system by adding "_R_CHECK_LENGTH_1_LOGIC2_=verbose" to my .Renviron file. I will fix the errors and push fixes soon. Thanks again, Ulrich -Original Message- From: Henrik Bengtsson Sen

Re: [Bioc-devel] Build error "failure: length > 1 in coercion to logical" not reproducible

2021-06-17 Thread Henrik Bengtsson
On Thu, Jun 17, 2021 at 2:32 AM wrote: > > Dear colleagues, > > It seems to me that, starting with the latest BioC devel branch (3.14), the > build systems have become more pedantic about logical vectors of length > 1 > in conditions. Two of the packages I am maintaining, 'kebabs' and 'procoil' >

[Bioc-devel] Build error "failure: length > 1 in coercion to logical" not reproducible

2021-06-17 Thread bodenhofer
Dear colleagues, It seems to me that, starting with the latest BioC devel branch (3.14), the build systems have become more pedantic about logical vectors of length > 1 in conditions. Two of the packages I am maintaining, 'kebabs' and 'procoil' currently fail to build. Surely I want to fix this. H