[Bioc-devel] Reducing number of dependencies

2021-07-05 Thread David Jimenez-Morales
Dear Bioc gurus, I am trying to reduce the number of dependencies in my package. One of the suggestions is: Importing from so many packages makes the package vulnerable to any of > them becoming unavailable. Move as many as possible to Suggests and > use conditionally. In a script I woul

[Bioc-devel] Replicating Windows build error for BioC package submission

2021-07-05 Thread Benjamin Story
Hi all, I’m trying to debug why my package (mitoClone2) submission fails the R CMD build step on Windows (Linux and Mac are working) specifically on the Bioconductor test machine. My first steps were to try to reproduce the output on my personal Windows computer by installing the package from

Re: [Bioc-devel] Package did not update after push

2021-07-05 Thread Fabricio de Almeida
Thank you very much, Vincent. = Fabr�cio de Almeida Silva Undergraduate degree in Biological Sciences (UENF) MSc. candidate in Plant Biotechnology (PGBV/UENF - RJ/Brazil) Laborat�rio de Qu�mica e Fun��o de Prote�nas e Pept�deos (LQFPP/CBB/UENF - RJ/Brazil) Lattes CN

Re: [Bioc-devel] Package did not update after push

2021-07-05 Thread Vincent Carey
Your changes are present in Bioconductor git. The next available build report should reflect their effects. On Mon, Jul 5, 2021 at 7:49 AM Fabricio de Almeida < fabricio_almeidasi...@hotmail.com> wrote: > Hi, all. > > I pushed a simple bug fix to my package BioNERO on Friday, but the Bioc > page

[Bioc-devel] Package did not update after push

2021-07-05 Thread Fabricio de Almeida
Hi, all. I pushed a simple bug fix to my package BioNERO on Friday, but the Bioc page still shows "Updated before release" (see https://bioconductor.org/packages/release/bioc/html/BioNERO.html). I know it can take up to 48 hours for the changes to be visible, but I pushed more than 48 hours ag

Re: [Bioc-devel] configure did not have execute permissions: corrected

2021-07-05 Thread Davide Corso
Hi, I tried to remove the permissions and putting them back but it didn't work. I keep getting that Windows build warning. I think I'll wait for a response from the reviewer. Best regards, Davide Il giorno dom 4 lug 2021 alle ore 02:26 Oliver Voogd ha scritto: > Hi, > > I had the same issue wi