Re: [Bioc-devel] Can't push to upstream for ToxicoGx

2021-10-06 Thread Nitesh Turaga
Hi Chris, Either way, this is a problem we have to solve post release. I’ve given the SSH key you are using access to that package as well. It should work now. Best Nitesh Turaga Scientist II, Department of Data Science, Bioconductor Core Team Member Dana Farber Cancer Institute > On Oct 6,

Re: [Bioc-devel] Can't push to upstream for ToxicoGx

2021-10-06 Thread Nitesh Turaga
Hi Can you just try with a new SSH key? This is again related to using the wrong account. benjamin.haibe.ka...@utoronto.ca is the email associated with the BiocCredentials account, and `ChristopherEeles` is the GitHub username / Bioc ID attached to it. Best, Nitesh Turaga Scientist II, Dep

[Bioc-devel] Can't push to upstream for ToxicoGx

2021-10-06 Thread Chris Eeles
Hello BioC core team, I am having a weird issue with pushing a fix to the ToxicoGx repo. I tried removing and re-adding the upstream branch, but the problem still persists. I can fetch and pull from the remote using my SSH key, I can also access our CoreGx repo (push and pull) using the same ke

Re: [Bioc-devel] Testthat problem - version info

2021-10-06 Thread Hervé Pagès
Hi Felix, On 06/10/2021 11:04, Felix Ernst wrote: Hi all, I have been notified about some issues and it is quite clear that they are from testthat Darn! just when I switched from RUnit to testhat for the first time for a new package: https://github.com/Bioconductor/S4Arrays https://mast

[Bioc-devel] Testthat problem - version info

2021-10-06 Thread Felix Ernst
Hi all, I have been notified about some issues and it is quite clear that they are from testthat https://master.bioconductor.org/checkResults/3.14/bioc-LATEST/RNAmodR/nebbiolo2-checksrc.html Can somebody let me know which testthat version was used for the last check run? I want to raise the is

[Bioc-devel] Looking for suggestions for BiocParallel

2021-10-06 Thread Jiefei Wang
Dear all, We are preparing for the new devel branch for Bioc 3.15, so we look for suggestions for BiocParallel from our community. If you think there is anything we can improve, please feel free to leave your comments here: https://github.com/Bioconductor/BiocParallel/issues/160 Cheers, Jiefei _