Hi everyone,
My package "ReactomeGSA" is currently not building on MacOS due to a
presumably expired SSL certificate.
The certificate was expired for a few days, but we renewed it already a
few weeks ago. It seems, that the build system is not fetching the new
certificate. On all other build
Hi Johannes,
We've updated the certificates on the release Mac builder yesterday, so we
should see these issues clear up on the next release build report Friday.
Jennifer Wokaty
Bioconductor Core Team
From: Bioc-devel on behalf of Johannes Griss
Sent
Hi Jennifer,
Thanks a lot for the quick response!
Kind regards,
Johannes
On 14.10.21 15:11, Jennifer Wokaty wrote:
Hi Johannes,
We've updated the certificates on the release Mac builder yesterday, so we
should see these issues clear up on the next release build report Friday.
Jennifer Wokat
Hi everybody,
My package *InterCellar *is currently getting the error "Avoid references
to external hosting platforms" when running BiocCheck.
The error is caused by href items pointing towards the github repos of the
package itself, in the form of clickable links (the package is a Shiny app).
The
Dear Bioconductor team,
I have recently pushed changes to update the metadata information for
NanoporeRNASeq. Could you provide guidance on the next steps to update the data
in the experiment hub?
Thanks
Regards,
CHEN Ying
This e-mail and any attachments are only for the use of the intended rec
Thank you for reaching out. In the future, hub related questions and requests
can be sent to h...@bioconductor.org.
I will send a private email to you with credentials you can use for uploading
the new data.
Cheers
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Cente
Hello BioC community,
I am the lead developer for the CoreGx, PharmacoGx, RadioGx and ToxicoGx
packages. We have recently been working on major updates to the structure of a
CoreSet, which is inherited by the main class in all three of the other
packages listed.
While making these changes, we
Hi Marta,
Thank you for bringing this to our attention.
We've made an update to BiocCheck to minimize these false positives.
Please use BiocCheck version >= 1.29.16 which should propagate in a
day or so.
Best regards,
Marcel
On 10/14/21 10:39 AM, Marta Interlandi wrote:
Hi everybody,
My pack
Many thanks to Hervé and Martin. Two of my packages now passed multiple
platform build/check.
Regards,
Zhi Yang
On Wed, Oct 13, 2021 at 10:18 AM Hervé Pagès
wrote:
> Update: I defined the JAGS_HOME environment variable on riesling1 as
> suggested off-list by Martin (thanks Martin), so now rj
