Re: [Bioc-devel] SSL certificate error on nebbiolo2

2021-11-05 Thread Hervé Pagès
Thanks Mike. I never heard about useEnsembl() before. That sounds like a nice addition. There are a few packages maintained by the core team (OrganismDbi, GenomicFeatures, etc...) where we still use useMart(). These packages are victims of the Ensembl Mart flakiness almost every day on the

[Bioc-devel] Add or Transfer Maintainership of DecoupleR Package

2021-11-05 Thread Jesús Vélez Santiago
Hi, I would like to request to add a new maintainership or change the maintainership completely for the decoupleR package ( https://www.bioconductor.org/packages/release/bioc/html/decoupleR.html). New maintainer information: - Name: Pau Badia-i-Mompel - email: pau.ba...@uni-heidelberg.de

Re: [Bioc-devel] SSL certificate error on nebbiolo2

2021-11-05 Thread Nicolas Delhomme
Thanks Mike and Hervé for the answers! I’ll give it a go. Best, Nico > On 4 Nov 2021, at 23:02, Mike Smith wrote: > > Hi Nico, > > Please try changing your calls to useMart() to useEnsembl(). That function > has some checking that should detect this problem (it's real for all Ubuntu >