[Bioc-devel] commit access

2022-10-12 Thread Oksana Sorokina
Dear Bioc members, I would like Anatoly Sorokin to have commit access for the synaptome.data and synaptome.db packages. email: lpto...@gmail.com github: lptolik. Please let me know if you need more information. Many thanks in advance! All the best, Oksana Sorokina The University of Edinburgh is

Re: [Bioc-devel] Package checks with WARNING

2022-10-12 Thread Lapuente Santana, Oscar via Bioc-devel
Hi Hervé, Thanks for your suggestion. The package rstatix which I used and it's set as an import, calls the coin package but this one is defined as a suggests in the description file of rstatix package (https://github.com/kassambara/rstatix/blob/master/DESCRIPTION). In particular, I am

Re: [Bioc-devel] Package checks with WARNING

2022-10-12 Thread Hervé Pagès
Hi Óscar, On 12/10/2022 01:09, Lapuente Santana, Oscar via Bioc-devel wrote: Dear Bioconductor developers/maintainers, My package ‘easier’ checks with WARNING in both the current 3.15 release and the devel version. I am just checking in to see if that’s okay since this was also the case in

[Bioc-devel] Bioconductor Release 3.15 Code Freeze

2022-10-12 Thread Kern, Lori
The Code Freeze for the current Bioconductor 3.15 Release is next Monday October 17, 2022. After this date there will be no changes to the code on this branch; this includes bug fixes or hot fixes. If your package is failing on the release build report, this weekend will be your last chance

Re: [Bioc-devel] Package checks with WARNING

2022-10-12 Thread Kern, Lori
Ideally all warnings and notes would be addressed. However as long as the package currently is not in an ERROR or TIMEOUT state this is okay; especially if it comes from a dependency of a dependency. Please keep an eye on all warnings and make sure there is not anything new or anything that can

Re: [Bioc-devel] Build Problems

2022-10-12 Thread Kern, Lori
The builds occur once a day. Depending on when you push it can take up to 48 hours to see the results on the build report page. See https://contributions.bioconductor.org/troubleshooting-build-report.html which has some suggest times. Likely, you pushed too late on Monday October 10th to see

[Bioc-devel] Build Problems

2022-10-12 Thread Brüggemann , Mirko
Hello Bioconductor, I’m sorry for asking again, but I still have trouble updating my package BindingSiteFinder (http://bioconductor.org/packages/3.16/bioc/html/BindingSiteFinder.html). I increased the version number in the DESCRIPTION file, pushed all changes to github and also to

[Bioc-devel] Package checks with WARNING

2022-10-12 Thread Lapuente Santana, Oscar via Bioc-devel
Dear Bioconductor developers/maintainers, My package ‘easier’ checks with WARNING in both the current 3.15 release and the devel version. I am just checking in to see if that’s okay since this was also the case in the first submission (the warning stems from a dependency of a dependency)