Re: [Bioc-devel] Build error for CaDrA package on kunpeng2 Linux machine

Hi Martin, That would be very helpful. Thanks so much! Right now, it is failing in one of the unit test cases. In particular, our core function, CaDrA::CaDrA, which is used to run permutation-based tests to determine whether the strength of the association between the set of features and the ob

Re: [Bioc-devel] groHMM package error

There is no RELEASE_3_18 branch until the release next week (created automatically by the core team on release day) . All updates should be pushed to the devel branch. Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinf

Re: [Bioc-devel] Build error for CaDrA package on kunpeng2 Linux machine

On Wed, Oct 18, 2023 at 11:11 PM Chau, Reina wrote: > Thank you both! I will look thru the links and see if I can implement a > fix. > I'd be happy to test any patches if it will be easier for you ! Martin > > Best, > > Reina C. > > On Oct 18, 2023, at 4:03 PM, Martin Grigorov > wrote: > >

Re: [Bioc-devel] groHMM package error

Hi, On Wed, Oct 18, 2023 at 11:31 PM Tulip Nandu wrote: > Hi, > > I just got an email from the Bioconductor stating, > > According to the Multiple platform build/check report for BioC 3.18, > the groHMM package has the following problem(s): > > o ERROR for 'R CMD build' on nebbiolo2. See the de

Re: [Bioc-devel] groHMM package error

Is this error to be neglected then? Package: groHMM Version: 1.35.0 Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data groHMM StartedAt: 2023-10-17 17:05:26 -0400 (Tue, 17 Oct 2023) EndedAt: 2023-10-17 17:07:18 -0400 (Tue, 17 Oct 2023) EllapsedTime: 112.0

[Bioc-devel] groHMM package error

Hi, I just got an email from the Bioconductor stating, According to the Multiple platform build/check report for BioC 3.18, the groHMM package has the following problem(s): o ERROR for 'R CMD build' on nebbiolo2. See the details here: https://urldefense.com/v3/__https://master.bioconducto

Re: [Bioc-devel] Build error for CaDrA package on kunpeng2 Linux machine

Thank you both! I will look thru the links and see if I can implement a fix. Best, Reina C. On Oct 18, 2023, at 4:03 PM, Martin Grigorov wrote: Hi, On Wed, Oct 18, 2023 at 10:48 PM Hervé Pagès mailto:hpages.on.git...@gmail.com>> wrote: Hi Reina, Note that CaDrA results on Mac ARM64 are also

Re: [Bioc-devel] Build error for CaDrA package on kunpeng2 Linux machine

Hi, On Wed, Oct 18, 2023 at 10:48 PM Hervé Pagès wrote: > Hi Reina, > > Note that CaDrA results on Mac ARM64 are also affected: > https://bioconductor.org/checkResults/devel/bioc-mac-arm64-LATEST/CaDrA/ > > See Martin Grigorov's blog post here > https://blog.bioconductor.org/posts/2023-06-09-deb

Re: [Bioc-devel] Build error for CaDrA package on kunpeng2 Linux machine

Hi Reina, Note that CaDrA results on Mac ARM64 are also affected: https://bioconductor.org/checkResults/devel/bioc-mac-arm64-LATEST/CaDrA/ See Martin Grigorov's blog post here https://blog.bioconductor.org/posts/2023-06-09-debug-linux-arm64-on-docker/ for how to debug Linux ARM64 related issue

[Bioc-devel] Build error for CaDrA package on kunpeng2 Linux machine

Hi Bioconductor Core Team, I’m the maintainer of CaDrA package, and recently, I notice that my package built successfully for all platforms except on Kunpeng2 Linux machine (see https://bioconductor.org/checkResults/devel/bioc-LATEST/CaDrA/ and https://bioconductor.org/checkResults/devel/bioc-L

Re: [Bioc-devel] Push update to an existing remote branch

Hi Carlotta, The branch is named devel on git.bioconductor.org. If you want to push from your local main branch to your repo on git.bioconductor.org, you should do git push upstream main:devel See https://contributions.bioconductor.org/git-version-control.html for more details. Jennifer Wokat

Re: [Bioc-devel] Push update to an existing remote branch

Bioconductor does not have a main branch. The default branch on BIoconductor is devel. If your local or github branch is called main, you need to map the main branch to the devel branch of Bioconductor. git push upstream main:devel Lori Shepherd - Kern Bioconductor Core Team Roswell Park

[Bioc-devel] Hub access temporarily unavailable

Hello Bioconductor, We are experiencing temporary downtime of the experimenthub and annotationhub. We are working on a resolution as soon as possible. We appreciate your understanding. Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biost

[Bioc-devel] Push update to an existing remote branch

Hi all, I have a package in review on g...@git.bioconductor.org and I have added a remote named upstream pointing to my package there. I want to push an updated version and $ git push origin main Works well, however $ git push upstream main Doesn't