[Bioc-devel] Workflow package build all OK but no vignette and red Package propagation status LED

2023-11-13 Thread James Perkins
Hi, I am the maintainer of the Workflow package ExpHunterSuite. In the build report for the release branch, 3.18, my build and install status are green-OK. However, I have a red LED for Package Propagation. How can I tell what's gone wrong, and how could I fix it? https://bioconductor.org/

Re: [Bioc-devel] Workflow package build all OK but no vignette and red Package propagation status LED

2023-11-13 Thread Martin Grigorov
Hi, If you hover over the red LED you will see the following hint: NO, package depends on 'miRBaseConverter' which is not available" Regards, Martin On Mon, Nov 13, 2023 at 11:31 AM James Perkins wrote: > Hi, > > I am the maintainer of the Workflow package ExpHunterSuite. > > In the build repo

Re: [Bioc-devel] Package check error under BiocVersion 3.18

2023-11-13 Thread Mike Smith
Hi, As you surmise, it looks like this is a conflict between Matrix and SeuratObject. It's reported in quite a few places e.g. https://github.com/satijalab/seurat/issues/7986 I don't think there's much you can do except wait for the Seurat maintainers to release an update to their package. Give

Re: [Bioc-devel] Package check error despite commit

2023-11-13 Thread Kern, Lori via Bioc-devel
Experiment Data packages are built twice a week on Tuesday and Thursday. The schedule is found on the check home page https://bioconductor.org/checkResults/ The changes were only pushed up on November 10 so they should be reflected in tomorrow's report. Cheers, Lori Shepherd - Kern Biocondu

[Bioc-devel] CRAN downtime may effect package installation

2023-11-13 Thread Kern, Lori via Bioc-devel
There is an announcement at https://cran.r-project.org/ Dear users, The CRAN Admin Team will perform system upgrades during the period Wednesday November 15 until Thursday November 16, 2023. There will be intermittent outages in service during this time. We thank you for your understanding and