[Bioc-devel] autonomics : nebbiolo (only) fails to locate weave

2023-11-14 Thread Aditya Bhagwat via Bioc-devel
Dear BioC devel, autonomics devel install/build/checks: https://bioconductor.org/checkResults/devel/bioc-LATEST/autonomics/ fine on palomino3 (win) and merida1 (mac). 'fails to locate weave' on nebbiolo (ubuntu). Could this be a nebbiolo rather than an autonomics issue? Thankyou : ) Aditya

Re: [Bioc-devel] Request to reverse package deprecation (and support pushing changes)

2023-11-14 Thread Kern, Lori via Bioc-devel
Responded to the slack message as well but so it is documented on the mailing list. If the package was deprecated, yes you must request undeprecation here. The package was failing for over 6 months without updates or efforts to fix. We will only undeprecate once the package is building cleanl

[Bioc-devel] Build issue on nebbiolo2 for DEWSeq

2023-11-14 Thread Biohentze
Dear all, We are facing build issue on nebbiolo2 on our vignette for the package DEWSeq. The issue is that we use magittr pipe (%>%) in the vignette and the issue occurs only on the linux machine. Checks, builds and installation completes successfully on windows and mac. Here is the complete bu