Re: [Bioc-devel] autonomics : nebbiolo (only) fails to locate weave

2023-11-15 Thread Jennifer Wokaty
There were some issues with that version of R-devel, so we updated R on Linux devel builder yesterday. The error message that appears today is different for autonomics and similar to what is reported on the arm64 linux devel builder. I'm updating R on the Mac and Windows devel builders today so

Re: [Bioc-devel] Build issue on nebbiolo2 for DEWSeq

2023-11-15 Thread Hervé Pagès
Hi Sudeep, I don't see magrittr in any of the Depends, Imports, or Suggests field of DEWSeq. Remember that any function or symbol you use from another package requires that you declare that package in one of these fields. In this case, since you only use %>% in the vignette, then you only need

[Bioc-devel] Single Package Builder for new submission

2023-11-15 Thread Kern, Lori via Bioc-devel
We will be updating the single package builder for new package submissions to run on the devel version of Bioconductor (3.19) and R (4.4). During the update period there may be periods of intermittent downtime where build on demand is unavailable. We appreciate your understanding during this t

Re: [Bioc-devel] Diverging version numbering on Bioconductor RELEASE

2023-11-15 Thread migdal migdal
Awesome, thanks for the response! I think it should be possible to put what you are doing manually into GithubActions script, but I am not sure how to do that. On Wed, Nov 15, 2023, 12:12 Neumann, Steffen wrote: > Hi, > > so far I am doing this manually, I have my github as remote origin, > and

Re: [Bioc-devel] Diverging version numbering on Bioconductor RELEASE

2023-11-15 Thread Neumann, Steffen
Hi, so far I am doing this manually, I have my github as remote origin, and the bioc git as upstream, and indeed after the releases I pull from upstream the changed version number and push it to my origin on github. Yours, Steffen On Sat, 2023-11-11 at 09:35 +0100, migdal migdal wrote: > Hi guys

Re: [Bioc-devel] Build issue on nebbiolo2 for DEWSeq

2023-11-15 Thread Kristian Ullrich
Dear Sudeep, Have you tried to use the R basic pipe "|>" instead of the magrittr pipe? If you use it directly in your R function you could add in the corresponding function the following line: @importFrom magrittr %>% Best regards Kristian -- Kristian Ullrich, Ph.D. Max Planck Institute For