[Bioc-devel] Bioconductor Devel Build Machines Set to Daily Build Schedule, Release Set to MWF

2024-03-07 Thread Jennifer Wokaty
In preparation for the next release, the 3.19 devel builders will run daily except for Saturday. The release builders will run Monday, Wednesday, and Friday. R has also been updated on the release and devel builders. We'll also add the following flag to the Renviron.bioc for the devel Linux bu

Re: [Bioc-devel] [EXTERN] Re: R package on Github uses Bioconductor depenencies and cant be installed.

2024-03-07 Thread Kern, Lori via Bioc-devel
It looks like a permission denied ERROR. Perhaps R was installed as root and you do not have access to write to the default R install directory. You should install to a directory you do have write permissions by setting a lib argument or by setting the .libPaths() Lori Shepherd - Kern Bioco

Re: [Bioc-devel] [EXTERN] Re: R package on Github uses Bioconductor depenencies and cant be installed.

2024-03-07 Thread Ruff, Sergej
Hello, I tried using biocManager:install but it doesnt seem to work. I am using Ubuntu and I get the following error when installing installing to /usr/lib/R/library/00LOCK-survival/00new/survival/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package

Re: [Bioc-devel] Access rights for simPIC repository, git fetch error

2024-03-07 Thread Kern, Lori via Bioc-devel
I would either add a new ssh key or check out the FAQ section at http://contributions.bioconductor.org/git-version-control.html#faq specifically, #13, 14, and 15 Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics

[Bioc-devel] Access rights for simPIC repository, git fetch error

2024-03-07 Thread Sagrika Chugh
Hi Bioconductor team, I submitted a package called "simPIC" recently and want to make some changes as the reviewer suggested. I am following the instructions as mentioned here https://contributions.bioconductor.org/git-version-control.html#new-package-workflow But I get an error when i try to fe